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    CG5397 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33313, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5397provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031327
    Locus tag
    Dmel_CG5397
    See related
    AllianceGenome:FB:FBgn0031327
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CT16527; Dmel\CG5397
    Summary
    Is expressed in adult head; embryonic/larval plasmatocyte; and embryonic/larval tracheal dorsal trunk. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5397 in Genome Data Viewer
    Location:
    21F3-21F3; 2-2 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (1240036..1243018)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (1240036..1243018)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR43263 Neighboring gene uncharacterized protein Neighboring gene roundabout 3 Neighboring gene antennal protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Widespread regulation of gene expression in the Drosophila genome by the histone acetyltransferase dTip60. Schirling C, et al. Chromosoma, 2010 Feb. PMID 19949809
    2. Evidence for large domains of similarly expressed genes in the Drosophila genome. Spellman PT, et al. J Biol, 2002. PMID 12144710, Free PMC Article
    3. Cyclin-dependent kinase 8 module expression profiling reveals requirement of mediator subunits 12 and 13 for transcription of Serpent-dependent innate immunity genes in Drosophila. Kuuluvainen E, et al. J Biol Chem, 2014 Jun 6. PMID 24778181, Free PMC Article
    4. The nucleosome remodeling factor (NURF) regulates genes involved in Drosophila innate immunity. Kwon SY, et al. Dev Biol, 2008 Apr 15. PMID 18334252
    5. Using single-cell RNA sequencing to generate predictive cell-type-specific split-GAL4 reagents throughout development. Chen YD, et al. Proc Natl Acad Sci U S A, 2023 Aug 8. PMID 37523539, Free PMC Article

    See all (38) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    NOT enables peptidase activity IKR
    Inferred from Key Residues
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5397-PA
    CG5397-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      1240036..1243018
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001272936.1 → NP_001259865.1  uncharacterized protein Dmel_CG5397, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259865.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPZ5
      Conserved Domains (2) summary
      COG0657
      Location:82 → 261
      Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
      pfam00135
      Location:62 → 600
      COesterase; Carboxylesterase family

    2. NM_134747.3 → NP_608591.1  uncharacterized protein Dmel_CG5397, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608591.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPZ5
      Related
      FBpp0077586
      Conserved Domains (2) summary
      COG0657
      Location:82 → 261
      Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
      pfam00135
      Location:62 → 600
      COesterase; Carboxylesterase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VPZ5 Q9VPZ5

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