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    Nhsl2 NHS-like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317253, updated on 9-Dec-2024

    Summary

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    Symbol
    Nhsl2provided by RGD
    Full Name
    NHS-like 2provided by RGD
    Primary source
    RGD:1564117
    See related
    EnsemblRapid:ENSRNOG00000037951 AllianceGenome:RGD:1564117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564117; AABR07039210.1
    Summary
    Orthologous to human NHSL2 (NHS like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 60.4), Brain (RPKM 48.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nhsl2 in Genome Data Viewer
    Location:
    Xq22
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (71009940..71249427)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (66969953..67209464)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (71895202..71980019)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome X open reading frame 49 Neighboring gene similar to human chromosome X open reading frame 49 like 1 Neighboring gene retrotransposon Gag like 5 Neighboring gene uncharacterized LOC134484080 Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4 Neighboring gene ERCC excision repair 6 like, spindle assembly checkpoint helicase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    NHS-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      71009940..71249427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280443.1 → XP_063136513.1  NHS-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A1F6
      Related
      ENSRNOP00000107750.1, ENSRNOT00000142820.1

    2. XM_063280444.1 → XP_063136514.1  NHS-like protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8I6A1F6

    3. XM_039100211.2 → XP_038956139.1  NHS-like protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A8I6A1F6

    4. XM_039100212.2 → XP_038956140.1  NHS-like protein 2 isoform X6

      UniProtKB/TrEMBL
      A0A8I6A1F6

    5. XM_063280446.1 → XP_063136516.1  NHS-like protein 2 isoform X8

    6. XM_063280447.1 → XP_063136517.1  NHS-like protein 2 isoform X10

    7. XM_017602318.3 → XP_017457807.1  NHS-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A1F6, A0A8I6B629
      Related
      ENSRNOP00000097668.1, ENSRNOT00000110734.2
      Conserved Domains (1) summary
      pfam15273
      Location:544 → 676
      NHS; NHS-like

    8. XM_039100213.2 → XP_038956141.1  NHS-like protein 2 isoform X9

    9. XM_039100214.2 → XP_038956142.1  NHS-like protein 2 isoform X11

    10. XM_039100210.2 → XP_038956138.1  NHS-like protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZLN0, A0A8I6A1F6

    11. XM_063280445.1 → XP_063136515.1  NHS-like protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A8I6A1F6

    12. XM_063280448.1 → XP_063136518.1  NHS-like protein 2 isoform X12

      UniProtKB/TrEMBL
      A0A8I6AH67

    13. XM_039100215.2 → XP_038956143.1  NHS-like protein 2 isoform X12

      UniProtKB/TrEMBL
      A0A8I6AH67
    Nucleotide Protein Strain
    Heading Accession and Version

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