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    CRTAC1 cartilage acidic protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707486, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CRTAC1provided by VGNC
    Official Full Name
    cartilage acidic protein 1provided by VGNC
    Primary source
    VGNC:VGNC:71408
    See related
    Ensembl:ENSMMUG00000018154
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CRTAC1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (98315033..98480229, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (93388521..93553382, complement)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene zinc finger FYVE-type containing 27 Neighboring gene secreted frizzled related protein 5 Neighboring gene golgin A7 family member B Neighboring gene R3H domain and coiled-coil containing 1 like Neighboring gene lysyl oxidase like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonal fasciculation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cartilage acidic protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      98315033..98480229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015147883.2 → XP_015003369.2  cartilage acidic protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5K1U9R5, A0A5S6RC02, A0A8J8Y2X6, F7EGA6, F7F2K5, G7N0V3
      Related
      ENSMMUP00000023875.4, ENSMMUT00000025518.4
      Conserved Domains (3) summary
      pfam07645
      Location:557 → 603
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:458 → 516
      UnbV_ASPIC; ASPIC and UnbV
      pfam13517
      Location:297 → 361
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    2. XM_015147885.2 → XP_015003371.2  cartilage acidic protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R323, F7F2I8
      Related
      ENSMMUP00000054708.2, ENSMMUT00000073460.2
      Conserved Domains (3) summary
      pfam07645
      Location:557 → 603
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:458 → 516
      UnbV_ASPIC; ASPIC and UnbV
      pfam13517
      Location:297 → 361
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
    Nucleotide Protein
    Heading Accession and Version

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