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    PCDH15 protocadherin related 15 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702413, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PCDH15provided by VGNC
    Official Full Name
    protocadherin related 15provided by VGNC
    Primary source
    VGNC:VGNC:75608
    See related
    Ensembl:ENSMMUG00000009794
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PCDH15 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (83215586..84208687)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (77975445..79082668)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114669989 Neighboring gene uncharacterized LOC114669990 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC107000195 Neighboring gene neurofilament medium polypeptide-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114670137 Neighboring gene uncharacterized LOC107000196

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inner ear development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in desmosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-15
    Names
    protocadherin 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      83215586..84208687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002805729.3 → XP_002805775.3  protocadherin-15 isoform X3

      UniProtKB/TrEMBL
      F6Y049
      Related
      ENSMMUP00000012820.4, ENSMMUT00000013680.4
      Conserved Domains (1) summary
      cd11304
      Location:722 → 815
      Cadherin_repeat; Cadherin tandem repeat domain

    2. XM_028826625.1 → XP_028682458.1  protocadherin-15 isoform X4

      UniProtKB/TrEMBL
      A0A1D5Q7Y0
      Related
      ENSMMUP00000044147.2, ENSMMUT00000070277.2
      Conserved Domains (1) summary
      cd11304
      Location:722 → 815
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_015147600.2 → XP_015003086.2  protocadherin-15 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QS89, A0A1D5QYB3
      Related
      ENSMMUP00000053044.2, ENSMMUT00000074073.2
      Conserved Domains (1) summary
      cd11304
      Location:722 → 815
      Cadherin_repeat; Cadherin tandem repeat domain

    4. XM_028826624.1 → XP_028682457.1  protocadherin-15 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QS89
      Conserved Domains (1) summary
      cd11304
      Location:722 → 815
      Cadherin_repeat; Cadherin tandem repeat domain
    Nucleotide Protein
    Heading Accession and Version

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