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    SRR serine racemase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703426, updated on 1-Aug-2024

    Summary

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    Gene symbol
    SRR
    Gene description
    serine racemase
    Locus tag
    EGK_07999
    See related
    Ensembl:ENSMMUG00000052387
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    TSR1
    Orthologs
    human mouse all
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    Genomic context

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    See SRR in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (2168631..2197420)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (2241120..2260901)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene HIC ZBTB transcriptional repressor 1 Neighboring gene SMG6 nonsense mediated mRNA decay factor Neighboring gene mitochondrial calcium uniporter regulator 1 pseudogene Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene TSR1 ribosome maturation factor Neighboring gene small G protein signaling modulator 2 Neighboring gene MAX network transcriptional repressor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-serine ammonia-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine racemase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables threonine racemase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-serine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in L-serine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyruvate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine racemase
    Names
    pre-rRNA-processing protein TSR1 homolog
    XP_001087081.4
    XP_001087203.3
    XP_028691701.1
    XP_028691702.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      2168631..2197420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001087203.4 → XP_001087203.3  serine racemase isoform X2

      UniProtKB/TrEMBL
      F7DQ15, G7NHT7
      Related
      ENSMMUP00000035431.3, ENSMMUT00000042428.3
      Conserved Domains (1) summary
      cl00342
      Location:5 → 320
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    2. XM_028835869.1 → XP_028691702.1  serine racemase isoform X4

      Conserved Domains (1) summary
      cl00342
      Location:5 → 267
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    3. XM_028835868.1 → XP_028691701.1  serine racemase isoform X3

      Conserved Domains (1) summary
      cl00342
      Location:31 → 293
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    4. XM_001087081.4 → XP_001087081.4  serine racemase isoform X1

      UniProtKB/TrEMBL
      F6UVV0
      Related
      ENSMMUP00000023056.4, ENSMMUT00000024634.4
      Conserved Domains (1) summary
      cl00342
      Location:31 → 346
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
    Nucleotide Protein
    Heading Accession and Version

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