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    CHD1L chromodomain helicase DNA binding protein 1 like [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700179, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD1Lprovided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 1 likeprovided by VGNC
    Primary source
    VGNC:VGNC:71027
    See related
    Ensembl:ENSMMUG00000009024
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD1L in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (102829371..102884235, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (122056232..122112275)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678100 Neighboring gene prostaglandin reductase 1-like Neighboring gene flavin containing dimethylaniline monoxygenase 5 Neighboring gene uncharacterized LOC107000537 Neighboring gene protein kinase AMP-activated non-catalytic subunit beta 2 Neighboring gene NBPF member 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      102829371..102884235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149756.2 → XP_015005242.1  chromodomain-helicase-DNA-binding protein 1-like isoform X2

      UniProtKB/TrEMBL
      G7MG39
      Conserved Domains (2) summary
      PLN03142
      Location:1 → 627
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd03331
      Location:645 → 795
      Macro_Poa1p-like_SNF2; macrodomain, Poa1p-like family, SNF2 subfamily

    2. XM_028829708.1 → XP_028685541.1  chromodomain-helicase-DNA-binding protein 1-like isoform X3

      Conserved Domains (2) summary
      PLN03142
      Location:1 → 418
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd03331
      Location:436 → 586
      Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...

    3. XM_028829707.1 → XP_028685540.1  chromodomain-helicase-DNA-binding protein 1-like isoform X3

      Conserved Domains (2) summary
      PLN03142
      Location:1 → 418
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd03331
      Location:436 → 586
      Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...

    4. XM_028829699.1 → XP_028685532.1  chromodomain-helicase-DNA-binding protein 1-like isoform X3

      Conserved Domains (2) summary
      PLN03142
      Location:1 → 418
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd03331
      Location:436 → 586
      Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...

    5. XM_015149751.2 → XP_015005237.1  chromodomain-helicase-DNA-binding protein 1-like isoform X1

      UniProtKB/TrEMBL
      F7FGK6, F7FGM1, H9G268
      Related
      ENSMMUP00000011833.4, ENSMMUT00000012619.4
      Conserved Domains (2) summary
      PLN03142
      Location:48 → 701
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd03331
      Location:719 → 869
      Macro_Poa1p-like_SNF2; macrodomain, Poa1p-like family, SNF2 subfamily
    Nucleotide Protein
    Heading Accession and Version

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