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    RPRD1A regulation of nuclear pre-mRNA domain containing 1A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709217, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RPRD1Aprovided by VGNC
    Official Full Name
    regulation of nuclear pre-mRNA domain containing 1Aprovided by VGNC
    Primary source
    VGNC:VGNC:77103
    Locus tag
    EGK_09637
    See related
    Ensembl:ENSMMUG00000018777
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RPRD1A in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (46453929..46527978)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (24681318..24755100, complement)

    Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene elongator acetyltransferase complex subunit 2 Neighboring gene solute carrier family 39 member 6 Neighboring gene chromosome 18 C18orf21 homolog Neighboring gene microRNA mir-187

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, holoenzyme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulation of nuclear pre-mRNA domain-containing protein 1A
    Names
    Cyclin-dependent kinase inhibitor 2B-related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260968.1 → NP_001247897.1  regulation of nuclear pre-mRNA domain-containing protein 1A

      See identical proteins and their annotated locations for NP_001247897.1

      Status: PROVISIONAL

      Source sequence(s)
      JV043311
      UniProtKB/TrEMBL
      A0A8J8XN31, F6ZTW1, F6ZWC6, G7NKL7
      Related
      ENSMMUP00000024716.3, ENSMMUT00000026402.3
      Conserved Domains (2) summary
      cd17011
      Location:4 → 131
      CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
      pfam16566
      Location:165 → 310
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041771.1 Reference Mmul_10 Primary Assembly

      Range
      46453929..46527978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015121722.2 → XP_014977208.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8J8XN31, F6ZTW1, F6ZWC6, G7NKL7
      Related
      ENSMMUP00000024895.4, ENSMMUT00000026602.4
      Conserved Domains (2) summary
      cd17011
      Location:4 → 131
      CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
      pfam16566
      Location:165 → 310
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    2. XM_028837767.1 → XP_028693600.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X2

      Conserved Domains (2) summary
      pfam16566
      Location:165 → 263
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor
      cd17011
      Location:4 → 131
      CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
    Nucleotide Protein
    Heading Accession and Version

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