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    WHRN whirlin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708051, updated on 17-Aug-2024

    Summary

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    Official Symbol
    WHRNprovided by VGNC
    Official Full Name
    whirlinprovided by VGNC
    Primary source
    VGNC:VGNC:79030
    See related
    Ensembl:ENSMMUG00000031977
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See WHRN in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (28347040..28451394)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (24904932..25008422)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene uncharacterized LOC106993648 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114672737 Neighboring gene uncharacterized LOC114672738 Neighboring gene AT-hook transcription factor Neighboring gene orosomucoid 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auditory receptor cell stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor inner segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of stereocilia ankle link complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium tip IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    whirlin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      28347040..28451394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834914.1 → XP_028690747.1  whirlin isoform X1

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03307
      Location:552 → 818
      PHA03307; transcriptional regulator ICP4; Provisional
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:419 → 499
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

    2. XM_028834916.1 → XP_028690749.1  whirlin isoform X2

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03307
      Location:552 → 817
      PHA03307; transcriptional regulator ICP4; Provisional
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:419 → 499
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

    3. XM_028834920.1 → XP_028690753.1  whirlin isoform X8

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:419 → 499
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      pfam03154
      Location:605 → 791
      Atrophin-1; Atrophin-1 family

    4. XM_001096493.4 → XP_001096493.3  whirlin isoform X3

      UniProtKB/TrEMBL
      F7GW82, G7NG39
      Related
      ENSMMUP00000039757.3, ENSMMUT00000046729.3
      Conserved Domains (4) summary
      PHA03307
      Location:594 → 807
      PHA03307; transcriptional regulator ICP4; Provisional
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:419 → 499
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

    5. XM_015117003.2 → XP_014972489.2  whirlin isoform X4

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03378
      Location:608 → 862
      PHA03378; EBNA-3B; Provisional
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:419 → 499
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

    6. XM_015117004.2 → XP_014972490.2  whirlin isoform X7

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03378
      Location:538 → 793
      PHA03378; EBNA-3B; Provisional
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cl11968
      Location:419 → 475
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

    7. XM_028834918.1 → XP_028690751.1  whirlin isoform X5

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03307
      Location:486 → 752
      PHA03307; transcriptional regulator ICP4; Provisional
      cd00992
      Location:211 → 291
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:353 → 433
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

    8. XM_028834919.1 → XP_028690752.1  whirlin isoform X6

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03307
      Location:528 → 741
      PHA03307; transcriptional regulator ICP4; Provisional
      cd00992
      Location:211 → 291
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:353 → 433
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

    9. XM_028834915.1 → XP_028690748.1  whirlin isoform X1

      UniProtKB/TrEMBL
      G7NG39
      Conserved Domains (4) summary
      PHA03307
      Location:552 → 818
      PHA03307; transcriptional regulator ICP4; Provisional
      cd00992
      Location:138 → 215
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07356
      Location:37 → 112
      HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
      cd07357
      Location:419 → 499
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
    Nucleotide Protein
    Heading Accession and Version

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