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    HNRNPD heterogeneous nuclear ribonucleoprotein D [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694867, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HNRNPDprovided by VGNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein Dprovided by VGNC
    Primary source
    VGNC:VGNC:106590
    Locus tag
    EGK_15725
    See related
    Ensembl:ENSMMUG00000060484
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HNRNPD in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (51351283..51371879)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (52029466..52050325)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD42 Neighboring gene immunoglobulin (CD79A) binding protein 1-like Neighboring gene uncharacterized LOC114678302 Neighboring gene uncharacterized LOC114678303 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein D0
    Names
    heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260807.2 → NP_001247736.1  heterogeneous nuclear ribonucleoprotein D0

      See identical proteins and their annotated locations for NP_001247736.1

      Status: PROVISIONAL

      Source sequence(s)
      JV043560
      UniProtKB/TrEMBL
      A0A8J8XTP7, F7AVH8, G7MSX7
      Related
      ENSMMUP00000074156.1, ENSMMUT00000107763.1
      Conserved Domains (3) summary
      cd12583
      Location:183 → 257
      RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
      pfam08143
      Location:60 → 78
      CBFNT; CBFNT (NUC161) domain
      cd12756
      Location:99 → 172
      RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      51351283..51371879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138420.2 → XP_014993906.1  heterogeneous nuclear ribonucleoprotein D0 isoform X2

      UniProtKB/TrEMBL
      F7APJ0
      Related
      ENSMMUP00000075869.1, ENSMMUT00000079595.1
      Conserved Domains (3) summary
      cd12583
      Location:164 → 238
      RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
      pfam08143
      Location:60 → 78
      CBFNT; CBFNT (NUC161) domain
      cd12756
      Location:80 → 153
      RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

    2. XM_015138422.2 → XP_014993908.1  heterogeneous nuclear ribonucleoprotein D0 isoform X4

      Conserved Domains (3) summary
      cd12583
      Location:164 → 238
      RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
      pfam08143
      Location:60 → 78
      CBFNT; CBFNT (NUC161) domain
      cd12756
      Location:80 → 153
      RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

    3. XM_015138421.2 → XP_014993907.1  heterogeneous nuclear ribonucleoprotein D0 isoform X3

      UniProtKB/TrEMBL
      F7APH2
      Related
      ENSMMUP00000073464.1, ENSMMUT00000082867.1
      Conserved Domains (3) summary
      cd12583
      Location:183 → 257
      RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
      pfam08143
      Location:60 → 78
      CBFNT; CBFNT (NUC161) domain
      cd12756
      Location:99 → 172
      RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

    4. XM_028847967.1 → XP_028703800.1  heterogeneous nuclear ribonucleoprotein D0 isoform X3

      UniProtKB/TrEMBL
      F7APH2
      Conserved Domains (3) summary
      cd12583
      Location:183 → 257
      RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
      pfam08143
      Location:60 → 78
      CBFNT; CBFNT (NUC161) domain
      cd12756
      Location:99 → 172
      RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

    5. XM_028847966.1 → XP_028703799.1  heterogeneous nuclear ribonucleoprotein D0 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XTP7, F7AVH8, G7MSX7
      Conserved Domains (3) summary
      cd12583
      Location:183 → 257
      RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
      pfam08143
      Location:60 → 78
      CBFNT; CBFNT (NUC161) domain
      cd12756
      Location:99 → 172
      RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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