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    LHX9 LIM homeobox 9 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710636, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LHX9provided by VGNC
    Official Full Name
    LIM homeobox 9provided by VGNC
    Primary source
    VGNC:VGNC:74044
    Locus tag
    EGK_01820
    See related
    Ensembl:ENSMMUG00000012259
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LHX9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (55339622..55358001)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (168845516..168859592, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1B Neighboring gene protein FAM204A pseudogene Neighboring gene chromosome 1 C1orf53 homolog Neighboring gene uncharacterized LOC114679636 Neighboring gene NIMA related kinase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      55339622..55358001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015120769.2 → XP_014976255.1  LIM/homeobox protein Lhx9 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QN93, A0A8J8Y9E1, F6V031, G7MEZ9
      Related
      ENSMMUP00000016079.3, ENSMMUT00000017169.3
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 324
      Homeobox; Homeobox domain

    2. XM_028851792.1 → XP_028707625.1  LIM/homeobox protein Lhx9 isoform X3

      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      smart00389
      Location:267 → 312
      HOX; Homeodomain

    3. XM_028851784.1 → XP_028707617.1  LIM/homeobox protein Lhx9 isoform X2

      Conserved Domains (3) summary
      cd09377
      Location:110 → 168
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:42 → 105
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:252 → 305
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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