U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TRIM3 tripartite motif containing 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710846, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TRIM3provided by VGNC
    Official Full Name
    tripartite motif containing 3provided by VGNC
    Primary source
    VGNC:VGNC:78549
    Locus tag
    EGK_06540
    See related
    Ensembl:ENSMMUG00000007728
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRIM3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (59468030..59492973)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (60308282..60333217)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion-selective channel protein 1-like Neighboring gene translocase of inner mitochondrial membrane 10B Neighboring gene ADP ribosylation factor interacting protein 2 Neighboring gene hemopexin Neighboring gene amyloid beta precursor protein binding family B member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tripartite motif-containing protein 3
    Names
    RING finger protein 22
    NP_001253130.1
    XP_014970237.1
    XP_014970238.1
    XP_014970239.1
    XP_014970241.1
    XP_028688507.1
    XP_028688508.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266201.1 → NP_001253130.1  tripartite motif-containing protein 3

      See identical proteins and their annotated locations for NP_001253130.1

      Status: PROVISIONAL

      Source sequence(s)
      JU474025
      UniProtKB/TrEMBL
      A0A1D5RG25, A0A8J8YDW2, F7C974, F7C981, G7NE14
      Conserved Domains (5) summary
      smart00502
      Location:158 → 284
      BBC; B-Box C-terminal domain
      smart00557
      Location:322 → 419
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:471 → 744
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd16768
      Location:19 → 63
      RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
      cd19825
      Location:107 → 153
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      59468030..59492973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015114751.2 → XP_014970237.1  tripartite motif-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RG25, A0A8J8YDW2, F7C974, F7C981, G7NE14
      Related
      ENSMMUP00000010148.4, ENSMMUT00000010818.4
      Conserved Domains (5) summary
      smart00502
      Location:158 → 284
      BBC; B-Box C-terminal domain
      smart00557
      Location:322 → 419
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:471 → 744
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd16768
      Location:19 → 63
      RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
      cd19825
      Location:107 → 153
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)

    2. XM_015114752.2 → XP_014970238.1  tripartite motif-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RG25, A0A8J8YDW2, F7C974, F7C981, G7NE14
      Related
      ENSMMUP00000010147.4, ENSMMUT00000010817.4
      Conserved Domains (5) summary
      smart00502
      Location:158 → 284
      BBC; B-Box C-terminal domain
      smart00557
      Location:322 → 419
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:471 → 744
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd16768
      Location:19 → 63
      RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
      cd19825
      Location:107 → 153
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)

    3. XM_028832675.1 → XP_028688508.1  tripartite motif-containing protein 3 isoform X3

      Conserved Domains (4) summary
      smart00502
      Location:63 → 189
      BBC; B-Box C-terminal domain
      smart00557
      Location:227 → 324
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:376 → 649
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cl00034
      Location:26 → 58
      Bbox_SF; B-box-type zinc finger superfamily

    4. XM_015114755.2 → XP_014970241.1  tripartite motif-containing protein 3 isoform X3

      Conserved Domains (4) summary
      smart00502
      Location:63 → 189
      BBC; B-Box C-terminal domain
      smart00557
      Location:227 → 324
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:376 → 649
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cl00034
      Location:26 → 58
      Bbox_SF; B-box-type zinc finger superfamily

    5. XM_028832674.1 → XP_028688507.1  tripartite motif-containing protein 3 isoform X2

      Conserved Domains (5) summary
      smart00502
      Location:233 → 359
      BBC; B-Box C-terminal domain
      smart00336
      Location:185 → 226
      BBOX; B-Box-type zinc finger
      smart00557
      Location:397 → 494
      IG_FLMN; Filamin-type immunoglobulin domains
      cl18310
      Location:546 → 586
      NHL; NHL repeat unit of beta-propeller proteins
      cl17238
      Location:94 → 138
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. XM_015114753.2 → XP_014970239.1  tripartite motif-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RG25, A0A8J8YDW2, F7C974, F7C981, G7NE14
      Conserved Domains (5) summary
      smart00502
      Location:158 → 284
      BBC; B-Box C-terminal domain
      smart00557
      Location:322 → 419
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:471 → 744
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd16768
      Location:19 → 63
      RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
      cd19825
      Location:107 → 153
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials