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    VPS29 VPS29 retromer complex component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709646, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS29provided by VGNC
    Official Full Name
    VPS29 retromer complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:78956
    See related
    Ensembl:ENSMMUG00000009255
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VPS29 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (110142770..110154761, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (110476923..110488850, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 3 Neighboring gene GPN-loop GTPase 3 Neighboring gene family with sequence similarity 216 member A Neighboring gene small nucleolar RNA SNORD50 Neighboring gene peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 pseudogene Neighboring gene RAD9 checkpoint clamp component B Neighboring gene protein phosphatase targeting COQ7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      110142770..110154761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001107808.4 → XP_001107808.1  vacuolar protein sorting-associated protein 29 isoform X2

      See identical proteins and their annotated locations for XP_001107808.1

      UniProtKB/TrEMBL
      A0A1D5QIR8
      Conserved Domains (1) summary
      cd07394
      Location:6 → 183
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

    2. XM_001107873.3 → XP_001107873.1  vacuolar protein sorting-associated protein 29 isoform X3

      See identical proteins and their annotated locations for XP_001107873.1

      UniProtKB/TrEMBL
      A0A5K1VGX9, F7H8D1, G7N5G8
      Related
      ENSMMUP00000012121.4, ENSMMUT00000012932.4
      Conserved Domains (1) summary
      cd07394
      Location:2 → 179
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

    3. XM_015152780.2 → XP_015008266.1  vacuolar protein sorting-associated protein 29 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QIR8
      Conserved Domains (1) summary
      cd07394
      Location:34 → 211
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

    RNA

    1. XR_003720807.1 RNA Sequence

      Related
      ENSMMUT00000058318.2
    Nucleotide Protein
    Heading Accession and Version

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