U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TRIM38 tripartite motif containing 38 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694861, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TRIM38provided by VGNC
    Official Full Name
    tripartite motif containing 38provided by VGNC
    Primary source
    VGNC:VGNC:78548
    See related
    Ensembl:ENSMMUG00000061288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRIM38 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (144004163..144026996, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (26548672..26571517)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene H1.1 linker histone, cluster member Neighboring gene uncharacterized LOC114677674 Neighboring gene solute carrier family 17 member 2 Neighboring gene H2A clustered histone 3, pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tripartite motif-containing protein 38; E3 ubiquitin-protein ligase TRIM38

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      144004163..144026996 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015135724.2 → XP_014991210.2  E3 ubiquitin-protein ligase TRIM38

      UniProtKB/TrEMBL
      A0A5F7ZAF8, G7MQW0
      Related
      ENSMMUP00000071320.1, ENSMMUT00000099990.1
      Conserved Domains (4) summary
      smart00336
      Location:88 → 129
      BBOX; B-Box-type zinc finger
      COG1196
      Location:135 → 254
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd16600
      Location:13 → 63
      RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins

    2. XM_015135722.2 → XP_014991208.2  E3 ubiquitin-protein ligase TRIM38

      UniProtKB/TrEMBL
      A0A5F7ZAF8, G7MQW0
      Related
      ENSMMUP00000062546.1, ENSMMUT00000101169.1
      Conserved Domains (4) summary
      smart00336
      Location:88 → 129
      BBOX; B-Box-type zinc finger
      COG1196
      Location:135 → 254
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd16600
      Location:13 → 63
      RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins

    3. XM_028847783.1 → XP_028703616.1  E3 ubiquitin-protein ligase TRIM38

      UniProtKB/TrEMBL
      A0A5F7ZAF8, G7MQW0
      Conserved Domains (4) summary
      smart00336
      Location:88 → 129
      BBOX; B-Box-type zinc finger
      COG1196
      Location:135 → 254
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd16600
      Location:13 → 63
      RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins

    4. XM_015135723.2 → XP_014991209.2  E3 ubiquitin-protein ligase TRIM38

      UniProtKB/TrEMBL
      A0A5F7ZAF8, G7MQW0
      Conserved Domains (4) summary
      smart00336
      Location:88 → 129
      BBOX; B-Box-type zinc finger
      COG1196
      Location:135 → 254
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd16600
      Location:13 → 63
      RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.