U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SPATA6 spermatogenesis associated 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710827, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SPATA6provided by VGNC
    Official Full Name
    spermatogenesis associated 6provided by VGNC
    Primary source
    VGNC:VGNC:77953
    See related
    Ensembl:ENSMMUG00000009282
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SPATA6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (175939458..176113498)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (47867505..48040939, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene BEN domain containing 5 Neighboring gene uncharacterized LOC114672395 Neighboring gene uncharacterized LOC114672394 Neighboring gene U6 spliceosomal RNA Neighboring gene nuclear inhibitor of protein phosphatase 1 pseudogene Neighboring gene putative selection and upkeep of intraepithelial T-cells protein 1 homolog Neighboring gene solute carrier family 5 member 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables myosin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in motile cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    spermatogenesis-associated protein 6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265949.1 → NP_001252878.1  spermatogenesis-associated protein 6

      See identical proteins and their annotated locations for NP_001252878.1

      Status: PROVISIONAL

      Source sequence(s)
      JU335095
      UniProtKB/TrEMBL
      F7H5Z0, G7MGY5, H9FW39
      Related
      ENSMMUP00000012159.4, ENSMMUT00000012971.4
      Conserved Domains (1) summary
      pfam14909
      Location:11 → 149
      SPATA6; Spermatogenesis-assoc protein 6

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      175939458..176113498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139044.2 → XP_014994530.1  spermatogenesis-associated protein 6 isoform X1

      UniProtKB/TrEMBL
      G7MGY5
      Conserved Domains (1) summary
      pfam14909
      Location:11 → 149
      SPATA6; Spermatogenesis-assoc protein 6

    2. XM_015139052.2 → XP_014994538.1  spermatogenesis-associated protein 6 isoform X3

      UniProtKB/TrEMBL
      G7MGY5
      Conserved Domains (1) summary
      pfam14909
      Location:11 → 149
      SPATA6; Spermatogenesis-assoc protein 6

    3. XM_028844159.1 → XP_028699992.1  spermatogenesis-associated protein 6 isoform X2

      UniProtKB/TrEMBL
      G7MGY5
      Conserved Domains (1) summary
      pfam14909
      Location:2 → 87
      SPATA6; Spermatogenesis-assoc protein 6

    RNA

    1. XR_003727304.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials