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    COL27A1 collagen type XXVII alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708556, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL27A1provided by VGNC
    Official Full Name
    collagen type XXVII alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:104888
    See related
    Ensembl:ENSMMUG00000031973
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL27A1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    62
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (28539202..28698465, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (25096395..25254542, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672738 Neighboring gene AT-hook transcription factor Neighboring gene orosomucoid 1 Neighboring gene microRNA mir-455 Neighboring gene uncharacterized LOC114672633 Neighboring gene uncharacterized LOC114672634

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(XXVII) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      28539202..28698465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834925.1 → XP_028690758.1  collagen alpha-1(XXVII) chain isoform X2

      Conserved Domains (4) summary
      pfam01391
      Location:685 → 743
      Collagen; Collagen triple helix repeat (20 copies)
      PHA03247
      Location:285 → 567
      PHA03247; large tegument protein UL36; Provisional
      cl02436
      Location:1652 → 1850
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:43 → 218
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    2. XM_028834927.1 → XP_028690760.1  collagen alpha-1(XXVII) chain isoform X5

      Conserved Domains (5) summary
      pfam01391
      Location:687 → 745
      Collagen; Collagen triple helix repeat (20 copies)
      PHA03247
      Location:287 → 569
      PHA03247; large tegument protein UL36; Provisional
      pfam03157
      Location:1145 → 1543
      Glutenin_hmw; High molecular weight glutenin subunit
      cl02436
      Location:1632 → 1830
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:45 → 220
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    3. XM_015117010.2 → XP_014972496.2  collagen alpha-1(XXVII) chain isoform X4

      Conserved Domains (4) summary
      pfam01391
      Location:669 → 727
      Collagen; Collagen triple helix repeat (20 copies)
      PHA03247
      Location:287 → 569
      PHA03247; large tegument protein UL36; Provisional
      cl02436
      Location:1636 → 1834
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:45 → 220
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    4. XM_028834926.1 → XP_028690759.1  collagen alpha-1(XXVII) chain isoform X3

      Conserved Domains (4) summary
      pfam01391
      Location:687 → 745
      Collagen; Collagen triple helix repeat (20 copies)
      PHA03247
      Location:287 → 569
      PHA03247; large tegument protein UL36; Provisional
      cl02436
      Location:1636 → 1834
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:45 → 220
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    5. XM_015117009.2 → XP_014972495.2  collagen alpha-1(XXVII) chain isoform X1

      UniProtKB/TrEMBL
      F6UPZ2
      Related
      ENSMMUP00000011234.4, ENSMMUT00000011977.4
      Conserved Domains (4) summary
      pfam01391
      Location:687 → 745
      Collagen; Collagen triple helix repeat (20 copies)
      PHA03247
      Location:287 → 569
      PHA03247; large tegument protein UL36; Provisional
      cl02436
      Location:1654 → 1852
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:45 → 220
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    6. XM_028834928.1 → XP_028690761.1  collagen alpha-1(XXVII) chain isoform X6

      Conserved Domains (4) summary
      pfam01391
      Location:687 → 745
      Collagen; Collagen triple helix repeat (20 copies)
      PHA03247
      Location:287 → 569
      PHA03247; large tegument protein UL36; Provisional
      pfam09606
      Location:1351 → 1622
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl22861
      Location:45 → 220
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    RNA

    1. XR_001439918.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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