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    VSX1 visual system homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715973, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VSX1provided by VGNC
    Official Full Name
    visual system homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:108071
    See related
    Ensembl:ENSMMUG00000058095
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VSX1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (41537073..41550170)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (58128433..58139978, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene V-set domain-containing T-cell activation inhibitor 1-like Neighboring gene uncharacterized LOC114670421 Neighboring gene acyl-CoA synthetase short chain family member 1 Neighboring gene adipocyte plasma membrane associated protein Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    visual system homeobox 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      41537073..41550170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028828101.1 → XP_028683934.1  visual system homeobox 1 isoform X3

      Conserved Domains (3) summary
      PRK14959
      Location:47 → 146
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      COG5576
      Location:111 → 221
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 221
      Homeobox; Homeobox domain

    2. XM_028828103.1 → XP_028683936.1  visual system homeobox 1 isoform X3

      Conserved Domains (3) summary
      PRK14959
      Location:47 → 146
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      COG5576
      Location:111 → 221
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 221
      Homeobox; Homeobox domain

    3. XM_015149624.2 → XP_015005110.2  visual system homeobox 1 isoform X2

      Conserved Domains (3) summary
      PRK14959
      Location:47 → 146
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      COG5576
      Location:111 → 221
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 221
      Homeobox; Homeobox domain

    4. XM_028828104.1 → XP_028683937.1  visual system homeobox 1 isoform X5

      Conserved Domains (3) summary
      PRK14959
      Location:47 → 146
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      COG5576
      Location:111 → 209
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 213
      Homeobox; Homeobox domain

    5. XM_028828105.1 → XP_028683938.1  visual system homeobox 1 isoform X5

      Conserved Domains (3) summary
      PRK14959
      Location:47 → 146
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      COG5576
      Location:111 → 209
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 213
      Homeobox; Homeobox domain

    6. XM_015149625.2 → XP_015005111.2  visual system homeobox 1 isoform X4

      Conserved Domains (3) summary
      PRK14959
      Location:47 → 146
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      COG5576
      Location:111 → 209
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 209
      Homeobox; Homeobox domain

    7. XM_002798258.3 → XP_002798304.2  visual system homeobox 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8A2B9
      Related
      ENSMMUP00000071078.1, ENSMMUT00000107253.1
      Conserved Domains (2) summary
      COG5576
      Location:111 → 221
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:167 → 220
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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