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    PHF20 PHD finger protein 20 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711122, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHF20provided by VGNC
    Official Full Name
    PHD finger protein 20provided by VGNC
    Primary source
    VGNC:VGNC:75807
    Locus tag
    EGK_02453
    See related
    Ensembl:ENSMMUG00000010633
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PHF20 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (71005350..71192432)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (28145766..28332012, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L37 Neighboring gene U6 spliceosomal RNA Neighboring gene U4 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene SCAN domain containing 1 Neighboring gene cyclic nucleotide binding domain containing 2 Neighboring gene uncharacterized LOC107000418

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20
    Names
    Hepatocellular carcinoma-associated antigen 58

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      71005350..71192432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149104.2 → XP_015004590.1  PHD finger protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A663D7N2, A0A8J8XQ80, F7CBF5, G7N4Y3
      Related
      ENSMMUP00000037841.2, ENSMMUT00000044820.3
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:654 → 697
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam12618
      Location:176 → 259
      DUF3776; Protein of unknown function (DUF3776)
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    2. XM_028828380.1 → XP_028684213.1  PHD finger protein 20 isoform X2

      Conserved Domains (2) summary
      cd15634
      Location:516 → 559
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:9 → 175
      MIP-T3; Microtubule-binding protein MIP-T3

    3. XM_028828382.1 → XP_028684215.1  PHD finger protein 20 isoform X2

      Conserved Domains (2) summary
      cd15634
      Location:516 → 559
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:9 → 175
      MIP-T3; Microtubule-binding protein MIP-T3

    4. XM_028828381.1 → XP_028684214.1  PHD finger protein 20 isoform X2

      Conserved Domains (2) summary
      cd15634
      Location:516 → 559
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:9 → 175
      MIP-T3; Microtubule-binding protein MIP-T3

    5. XM_028828383.1 → XP_028684216.1  PHD finger protein 20 isoform X2

      Conserved Domains (2) summary
      cd15634
      Location:516 → 559
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:9 → 175
      MIP-T3; Microtubule-binding protein MIP-T3
    Nucleotide Protein
    Heading Accession and Version

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