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    IRF5 interferon regulatory factor 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700725, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IRF5provided by VGNC
    Official Full Name
    interferon regulatory factor 5provided by VGNC
    Primary source
    VGNC:VGNC:73763
    Locus tag
    EGK_14120
    See related
    Ensembl:ENSMMUG00000018478
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See IRF5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (155187611..155199826)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (154985609..154998199)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene kielin cysteine rich BMP regulator Neighboring gene filamin-C Neighboring gene transportin 3 Neighboring gene ornithine decarboxylase pseudogene Neighboring gene triosephosphate isomerase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon regulatory factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      155187611..155199826
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846278.1 → XP_028702111.1  interferon regulatory factor 5 isoform X3

      UniProtKB/TrEMBL
      A0A8J8Y769, F6X265, F7H6R4, G7MMB9
      Related
      ENSMMUP00000071460.1, ENSMMUT00000104108.1
      Conserved Domains (2) summary
      pfam00605
      Location:16 → 121
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:250 → 433
      IRF-3; Interferon-regulatory factor 3

    2. XM_001092569.4 → XP_001092569.1  interferon regulatory factor 5 isoform X3

      See identical proteins and their annotated locations for XP_001092569.1

      UniProtKB/TrEMBL
      A0A8J8Y769, F6X265, F7H6R4, G7MMB9
      Related
      ENSMMUP00000024311.3, ENSMMUT00000025982.4
      Conserved Domains (2) summary
      pfam00605
      Location:16 → 121
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:250 → 433
      IRF-3; Interferon-regulatory factor 3

    3. XM_015134878.2 → XP_014990364.1  interferon regulatory factor 5 isoform X3

      UniProtKB/TrEMBL
      A0A8J8Y769, F6X265, F7H6R4, G7MMB9
      Conserved Domains (2) summary
      pfam00605
      Location:16 → 121
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:250 → 433
      IRF-3; Interferon-regulatory factor 3

    4. XM_028846276.1 → XP_028702109.1  interferon regulatory factor 5 isoform X1

      UniProtKB/TrEMBL
      F6X274
      Related
      ENSMMUP00000024310.3, ENSMMUT00000025981.4
      Conserved Domains (2) summary
      pfam00605
      Location:147 → 252
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:381 → 564
      IRF-3; Interferon-regulatory factor 3

    5. XM_028846277.1 → XP_028702110.1  interferon regulatory factor 5 isoform X2

      Conserved Domains (2) summary
      pfam00605
      Location:147 → 252
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:381 → 511
      IRF-3; Interferon-regulatory factor 3
    Nucleotide Protein
    Heading Accession and Version

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