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    CYB5D1 cytochrome b5 domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716429, updated on 5-Mar-2024

    Summary

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    Gene symbol
    CYB5D1
    Gene description
    cytochrome b5 domain containing 1
    Locus tag
    EGK_08149
    See related
    Ensembl:ENSMMUG00000022221 Ensembl:ENSMMUG00000063668
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CYB5D1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (7650203..7706546)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (7863413..7884033)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 6B Neighboring gene transmembrane protein 88 Neighboring gene N-alpha-acetyltransferase 38, NatC auxiliary subunit Neighboring gene uncharacterized LOC114673049 Neighboring gene small Cajal body-specific RNA 21 Neighboring gene ring finger protein 227 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 3 Neighboring gene trafficking protein particle complex subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 3; cytochrome b5 domain containing 1
    Names
    Cytochrome b5 domain-containing protein 1
    chromodomain helicase DNA binding protein 3
    NP_001181422.1
    XP_014973985.1
    XP_014974013.2
    XP_014974020.2
    XP_014974021.2
    XP_028691549.1
    XP_028691550.1
    XP_028691551.1
    XP_028691552.1
    XP_028691553.1
    XP_028691554.1
    XP_028691555.1
    XP_028691556.1
    XP_028691557.1
    XP_028691558.1
    XP_028691559.1
    XP_028691560.1
    XP_028691561.1
    XP_028691562.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194493.2 → NP_001181422.1  cytochrome b5 domain containing 1

      See identical proteins and their annotated locations for NP_001181422.1

      Status: VALIDATED

      Source sequence(s)
      QNVO02000155
      UniProtKB/TrEMBL
      A0A8J8XZL6, G7NIH4, H9ERN2
      Related
      ENSMMUP00000075490.1, ENSMMUT00000091777.1
      Conserved Domains (1) summary
      pfam00173
      Location:21 → 70
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      7650203..7706546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835716.1 → XP_028691549.1  chromodomain-helicase-DNA-binding protein 3 isoform X1

    2. XM_028835720.1 → XP_028691553.1  chromodomain-helicase-DNA-binding protein 3 isoform X5

    3. XM_028835717.1 → XP_028691550.1  chromodomain-helicase-DNA-binding protein 3 isoform X2

    4. XM_028835721.1 → XP_028691554.1  chromodomain-helicase-DNA-binding protein 3 isoform X6

    5. XM_028835719.1 → XP_028691552.1  chromodomain-helicase-DNA-binding protein 3 isoform X4

    6. XM_028835723.1 → XP_028691556.1  chromodomain-helicase-DNA-binding protein 3 isoform X8

    7. XM_028835718.1 → XP_028691551.1  chromodomain-helicase-DNA-binding protein 3 isoform X3

    8. XM_028835729.1 → XP_028691562.1  chromodomain-helicase-DNA-binding protein 3 isoform X18

    9. XM_028835726.1 → XP_028691559.1  chromodomain-helicase-DNA-binding protein 3 isoform X12

    10. XM_015118499.2 → XP_014973985.1  chromodomain-helicase-DNA-binding protein 3 isoform X17

      UniProtKB/TrEMBL
      F7GYS7
      Conserved Domains (1) summary
      pfam00173
      Location:21 → 70
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

    11. XM_028835722.1 → XP_028691555.1  chromodomain-helicase-DNA-binding protein 3 isoform X7

    12. XM_028835724.1 → XP_028691557.1  chromodomain-helicase-DNA-binding protein 3 isoform X9

    13. XM_028835725.1 → XP_028691558.1  chromodomain-helicase-DNA-binding protein 3 isoform X10

      Related
      ENSMMUP00000057619.2, ENSMMUT00000062602.2

    14. XM_028835728.1 → XP_028691561.1  chromodomain-helicase-DNA-binding protein 3 isoform X14

      Conserved Domains (11) summary
      PLN03142
      Location:699 → 1253
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1532 → 1727
      PHA03169; hypothetical protein; Provisional
      cd15531
      Location:361 → 403
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:438 → 480
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:1358 → 1497
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:1717 → 1844
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:1292 → 1335
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:128 → 181
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:608 → 662
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:485 → 563
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:716 → 947
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3

    15. XM_028835727.1 → XP_028691560.1  chromodomain-helicase-DNA-binding protein 3 isoform X13

      Conserved Domains (11) summary
      PLN03142
      Location:708 → 1262
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1541 → 1736
      PHA03169; hypothetical protein; Provisional
      cd15531
      Location:370 → 412
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:447 → 489
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:1367 → 1506
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:1726 → 1853
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:1301 → 1344
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:137 → 190
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:617 → 671
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:494 → 572
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:725 → 956
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3

    16. XM_015118534.2 → XP_014974020.2  chromodomain-helicase-DNA-binding protein 3 isoform X15

      Related
      ENSMMUP00000029254.4, ENSMMUT00000031259.4
      Conserved Domains (11) summary
      PLN03142
      Location:719 → 1273
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1537 → 1705
      PHA03169; hypothetical protein; Provisional
      cd15531
      Location:381 → 423
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:458 → 500
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:628 → 682
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:505 → 583
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:736 → 967
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
      pfam06461
      Location:1378 → 1517
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:1312 → 1355
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:148 → 201
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:1736 → 1907
      CHDCT2; CHDCT2 (NUC038) domain

    17. XM_015118535.2 → XP_014974021.2  chromodomain-helicase-DNA-binding protein 3 isoform X16

      Conserved Domains (10) summary
      PLN03142
      Location:719 → 1273
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:381 → 423
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:458 → 500
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:1378 → 1517
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:1702 → 1873
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:1312 → 1355
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:148 → 201
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:628 → 682
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:505 → 583
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:736 → 967
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3

    18. XM_015118527.2 → XP_014974013.2  chromodomain-helicase-DNA-binding protein 3 isoform X11

      Conserved Domains (11) summary
      PLN03142
      Location:719 → 1273
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03169
      Location:1552 → 1747
      PHA03169; hypothetical protein; Provisional
      cd15531
      Location:381 → 423
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:458 → 500
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:1378 → 1517
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:1737 → 1864
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:1312 → 1355
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:148 → 201
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:628 → 682
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:505 → 583
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18055
      Location:736 → 967
      DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    Nucleotide Protein
    Heading Accession and Version

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