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    CALD1 caldesmon 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707050, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CALD1provided by VGNC
    Official Full Name
    caldesmon 1provided by VGNC
    Primary source
    VGNC:VGNC:70517
    Locus tag
    EGK_14156
    See related
    Ensembl:ENSMMUG00000006527
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CALD1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (161184020..161422488)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (161025226..161264798)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677037 Neighboring gene uncharacterized LOC114677038 Neighboring gene bisphosphoglycerate mutase Neighboring gene uncharacterized LOC114677039 Neighboring gene uncharacterized LOC106997680 Neighboring gene UPF0764 protein C16orf89-like Neighboring gene uncharacterized LOC114677040 Neighboring gene AGBL carboxypeptidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables myosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caldesmon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      161184020..161422488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134957.2 → XP_014990443.1  caldesmon isoform X1

      UniProtKB/TrEMBL
      G7MMF1
      Conserved Domains (1) summary
      pfam02029
      Location:603 → 866
      Caldesmon; Caldesmon

    2. XM_015134958.2 → XP_014990444.1  caldesmon isoform X2

      UniProtKB/TrEMBL
      G7MMF1
      Conserved Domains (1) summary
      pfam02029
      Location:603 → 865
      Caldesmon; Caldesmon

    3. XM_015134960.2 → XP_014990446.1  caldesmon isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZH08
      Related
      ENSMMUP00000064881.1, ENSMMUT00000098147.1
      Conserved Domains (1) summary
      pfam02029
      Location:334 → 597
      Caldesmon; Caldesmon

    4. XM_015134962.2 → XP_014990448.1  caldesmon isoform X5

      UniProtKB/TrEMBL
      F7H4L5, G7MMF1
      Related
      ENSMMUP00000008597.4, ENSMMUT00000009150.4
      Conserved Domains (1) summary
      pfam02029
      Location:531 → 794
      Caldesmon; Caldesmon

    5. XM_015134963.2 → XP_014990449.1  caldesmon isoform X6

      UniProtKB/TrEMBL
      G7MMF1
      Conserved Domains (1) summary
      pfam02029
      Location:531 → 793
      Caldesmon; Caldesmon

    6. XM_015134961.2 → XP_014990447.1  caldesmon isoform X4

      UniProtKB/TrEMBL
      F7H4M4, H9ES75
      Related
      ENSMMUP00000075135.1, ENSMMUT00000080897.1
      Conserved Domains (1) summary
      pfam02029
      Location:53 → 525
      Caldesmon

    RNA

    1. XR_001443884.2 RNA Sequence

    2. XR_001443880.2 RNA Sequence

    3. XR_001443879.2 RNA Sequence

    4. XR_001443881.2 RNA Sequence

    5. XR_001443882.2 RNA Sequence

    6. XR_001443885.2 RNA Sequence

    7. XR_001443883.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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