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    PHF2 PHD finger protein 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717585, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHF2provided by VGNC
    Official Full Name
    PHD finger protein 2provided by VGNC
    Primary source
    VGNC:VGNC:75974
    See related
    Ensembl:ENSMMUG00000008281
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PHF2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (108536219..108641000)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (43762230..43810453)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 120 member A opposite strand Neighboring gene family with sequence similarity 120 member A Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC106993691 Neighboring gene BARX homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase PHF2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      108536219..108641000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835354.1 → XP_028691187.1  lysine-specific demethylase PHF2 isoform X2

      UniProtKB/TrEMBL
      H9FVT7
      Conserved Domains (3) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7
      pfam02373
      Location:236 → 336
      JmjC; JmjC domain, hydroxylase

    2. XM_028835353.1 → XP_028691186.1  lysine-specific demethylase PHF2 isoform X1

      UniProtKB/TrEMBL
      F7HBF2, H9FVT7
      Related
      ENSMMUP00000010859.4, ENSMMUT00000011583.4
      Conserved Domains (3) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7
      pfam02373
      Location:236 → 336
      JmjC; JmjC domain, hydroxylase

    3. XM_028835355.1 → XP_028691188.1  lysine-specific demethylase PHF2 isoform X3

      UniProtKB/TrEMBL
      G7NF27
      Conserved Domains (2) summary
      smart00558
      Location:84 → 147
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam02373
      Location:119 → 219
      JmjC; JmjC domain, hydroxylase
    Nucleotide Protein
    Heading Accession and Version

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