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    APOB apolipoprotein B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702937, updated on 17-Aug-2024

    Summary

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    Official Symbol
    APOBprovided by VGNC
    Official Full Name
    apolipoprotein Bprovided by VGNC
    Primary source
    VGNC:VGNC:69985
    See related
    Ensembl:ENSMMUG00000007692
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See APOB in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (87937808..87979794)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (21224994..21266985, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2 pseudogene Neighboring gene tudor domain containing 15 Neighboring gene uncharacterized LOC106992861 Neighboring gene gamma-aminobutyric acid receptor-associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Apolipoprotein B mRNA editing in 12 different mammalian species: hepatic expression is reflected in low concentrations of apoB-containing plasma lipoproteins. Greeve J, et al. J Lipid Res, 1993 Aug. PMID 8409768
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables low-density lipoprotein particle receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cholesterol homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cholesterol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoprotein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in triglyceride mobilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mature chylomicron IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of very-low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein B-100
    Names
    apolipoprotein B (including Ag(x) antigen)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      87937808..87979794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001097500.4 → XP_001097500.3  apolipoprotein B-100

      UniProtKB/TrEMBL
      A0A1D5QDA7, F7CEU1
      Related
      ENSMMUP00000010112.4, ENSMMUT00000010778.4
      Conserved Domains (7) summary
      COG0419
      Location:2073 → 2533
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      pfam01347
      Location:42 → 593
      Vitellogenin_N; Lipoprotein amino terminal region
      sd00044
      Location:425 → 447
      HEAT; HEAT repeat [structural motif]
      pfam12491
      Location:4486 → 4541
      ApoB100_C; Apolipoprotein B100 C terminal
      pfam06448
      Location:957 → 1058
      DUF1081; Domain of Unknown Function (DUF1081)
      pfam09172
      Location:628 → 933
      DUF1943; Domain of unknown function (DUF1943)
      cl21487
      Location:1444 → 1861
      OM_channels; Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20) ...
    Nucleotide Protein
    Heading Accession and Version

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