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    ALMS1 ALMS1 centrosome and basal body associated protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706612, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ALMS1provided by VGNC
    Official Full Name
    ALMS1 centrosome and basal body associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:69794
    See related
    Ensembl:ENSMMUG00000002819
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ALMS1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (35165183..35392251, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (74480272..74702644)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671935 Neighboring gene TP53RK binding protein Neighboring gene N-acetyltransferase 8 (putative) Neighboring gene uncharacterized LOC106993008 Neighboring gene 60S ribosomal protein L3 pseudogene Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene Neighboring gene 40S ribosomal protein SA pseudogene Neighboring gene uncharacterized LOC114671938

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of centriole replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Alstrom syndrome protein 1
    Names
    Alstrom syndrome 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      35165183..35392251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112651.2 → XP_014968137.2  Alstrom syndrome protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QYF4
      Conserved Domains (1) summary
      pfam15309
      Location:4187 → 4318
      ALMS_motif; ALMS motif

    2. XM_015112654.2 → XP_014968140.2  Alstrom syndrome protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5QYF4
      Conserved Domains (1) summary
      pfam15309
      Location:4145 → 4276
      ALMS_motif; ALMS motif

    3. XM_015112656.2 → XP_014968142.2  Alstrom syndrome protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A1D5QYF4, F7H084
      Related
      ENSMMUP00000003771.4, ENSMMUT00000003995.4
      Conserved Domains (1) summary
      pfam15309
      Location:4131 → 4262
      ALMS_motif; ALMS motif

    4. XM_015112652.2 → XP_014968138.2  Alstrom syndrome protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QYF4
      Conserved Domains (1) summary
      pfam15309
      Location:4164 → 4295
      ALMS_motif; ALMS motif

    5. XM_028832374.1 → XP_028688207.1  Alstrom syndrome protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QYF4
      Related
      ENSMMUP00000053085.2, ENSMMUT00000061660.2
      Conserved Domains (1) summary
      pfam15309
      Location:4097 → 4228
      ALMS_motif; ALMS motif

    6. XM_015112653.2 → XP_014968139.2  Alstrom syndrome protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QYF4
      Conserved Domains (1) summary
      pfam15309
      Location:4154 → 4285
      ALMS_motif; ALMS motif
    Nucleotide Protein
    Heading Accession and Version

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