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    LRCH2 leucine rich repeats and calponin homology domain containing 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708436, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LRCH2provided by VGNC
    Official Full Name
    leucine rich repeats and calponin homology domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:74390
    See related
    Ensembl:ENSMMUG00000017323
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LRCH2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (111635063..111764584, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (108958649..109088133, complement)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene interleukin 13 receptor subunit alpha 2 Neighboring gene transcriptional coactivator YAP1 pseudogene Neighboring gene small nucleolar RNA SNORA35 Neighboring gene thymosin beta-4 pseudogene Neighboring gene 60S ribosomal protein L36 pseudogene Neighboring gene RBMX like 3 Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene leucine zipper protein 4 Neighboring gene tubulin alpha-1A chain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat and calponin homology domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      111635063..111764584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002806359.3 → XP_002806405.1  leucine-rich repeat and calponin homology domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      G7NT68
      Conserved Domains (5) summary
      cd00116
      Location:139 → 240
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:95 → 115
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00307
      Location:630 → 737
      CH; Calponin homology (CH) domain
      pfam12799
      Location:139 → 176
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:184 → 240
      LRR_8; Leucine rich repeat

    2. XM_001102903.4 → XP_001102903.1  leucine-rich repeat and calponin homology domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      F7HQ78, G7NT68
      Related
      ENSMMUP00000022795.3, ENSMMUT00000024354.4
      Conserved Domains (5) summary
      cd00116
      Location:139 → 240
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:95 → 115
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00307
      Location:647 → 754
      CH; Calponin homology (CH) domain
      pfam12799
      Location:139 → 176
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:184 → 240
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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