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    SMPD4 sphingomyelin phosphodiesterase 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718018, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMPD4provided by VGNC
    Official Full Name
    sphingomyelin phosphodiesterase 4provided by VGNC
    Primary source
    VGNC:VGNC:97831
    See related
    Ensembl:ENSMMUG00000005397
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMPD4 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (125559..156601)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (114645..148179)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha 3e Neighboring gene mitotic spindle organizing protein 2B Neighboring gene hornerin-like Neighboring gene coiled-coil domain-containing protein 74B-like Neighboring gene uncharacterized LOC100426235

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingomyelin phosphodiesterase D activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingomyelin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingomyelin phosphodiesterase 4
    Names
    sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)
    XP_014965281.1
    XP_014965282.1
    XP_014965283.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      125559..156601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015109796.2 → XP_014965282.1  sphingomyelin phosphodiesterase 4 isoform X2

      UniProtKB/TrEMBL
      F7FMC9, H9F7Y0
      Related
      ENSMMUP00000017845.4, ENSMMUT00000019054.4
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 743
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    2. XM_015109795.2 → XP_014965281.1  sphingomyelin phosphodiesterase 4 isoform X1

      UniProtKB/TrEMBL
      F7GT89, H9F7Y0
      Related
      ENSMMUP00000007130.4, ENSMMUT00000007591.4
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 772
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    3. XM_015109797.2 → XP_014965283.1  sphingomyelin phosphodiesterase 4 isoform X1

      UniProtKB/TrEMBL
      F7GT89, H9F7Y0
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 772
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
    Nucleotide Protein
    Heading Accession and Version

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