U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    USP42 ubiquitin specific peptidase 42 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703559, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    USP42provided by VGNC
    Official Full Name
    ubiquitin specific peptidase 42provided by VGNC
    Primary source
    VGNC:VGNC:79225
    See related
    Ensembl:ENSMMUG00000020321
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See USP42 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (39751172..39837574, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (40574405..40657221, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 10-like protein 2A Neighboring gene family with sequence similarity 220 member A Neighboring gene cytohesin 3 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene ankyrin repeat domain 61 Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 42
    XP_001090104.2
    XP_028700950.1
    XP_028700951.1
    XP_028700952.1
    XP_028700953.1
    XP_028700954.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      39751172..39837574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001090104.4 → XP_001090104.2  ubiquitin carboxyl-terminal hydrolase 42 isoform X2

      UniProtKB/TrEMBL
      A0A5F8ACJ8, H9ZEA3
      Related
      ENSMMUP00000079530.1, ENSMMUT00000089926.1
      Conserved Domains (3) summary
      PRK07764
      Location:727 → 950
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      PRK12678
      Location:845 → 1061
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:110 → 410
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    2. XM_028845117.1 → XP_028700950.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

      UniProtKB/TrEMBL
      A0A5F8ACJ8
      Conserved Domains (3) summary
      PRK07764
      Location:727 → 950
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      PRK12678
      Location:845 → 1061
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:110 → 410
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    3. XM_028845120.1 → XP_028700953.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X3

      UniProtKB/TrEMBL
      A0A5F8ACJ8
      Conserved Domains (3) summary
      PRK07764
      Location:616 → 839
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      PRK12678
      Location:734 → 950
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:38 → 299
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    4. XM_028845121.1 → XP_028700954.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X4

      UniProtKB/TrEMBL
      A0A5F8ACJ8
      Conserved Domains (3) summary
      PRK07764
      Location:573 → 796
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      PRK12678
      Location:691 → 907
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:1 → 256
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    5. XM_028845118.1 → XP_028700951.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

      UniProtKB/TrEMBL
      A0A5F8ACJ8
      Conserved Domains (3) summary
      PRK07764
      Location:727 → 950
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      PRK12678
      Location:845 → 1061
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:110 → 410
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    6. XM_028845119.1 → XP_028700952.1  ubiquitin carboxyl-terminal hydrolase 42 isoform X1

      UniProtKB/TrEMBL
      A0A5F8ACJ8
      Related
      ENSMMUP00000074696.1, ENSMMUT00000099840.1
      Conserved Domains (3) summary
      PRK07764
      Location:727 → 950
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      PRK12678
      Location:845 → 1061
      PRK12678; transcription termination factor Rho; Provisional
      cd02661
      Location:110 → 410
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials