U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SMG6 SMG6 nonsense mediated mRNA decay factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 721291, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SMG6provided by VGNC
    Official Full Name
    SMG6 nonsense mediated mRNA decay factorprovided by VGNC
    Primary source
    VGNC:VGNC:99262
    See related
    Ensembl:ENSMMUG00000023161
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SMG6 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (1925069..2168768, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (1953141..2241045, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-212 Neighboring gene HIC ZBTB transcriptional repressor 1 Neighboring gene mitochondrial calcium uniporter regulator 1 pseudogene Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene serine racemase Neighboring gene TSR1 ribosome maturation factor

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomerase RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of telomerase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    telomerase-binding protein EST1A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      1925069..2168768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015118204.2 → XP_014973690.1  telomerase-binding protein EST1A isoform X1

      UniProtKB/TrEMBL
      F7FDL6, H9FRX6, I0FK17
      Related
      ENSMMUP00000030488.3, ENSMMUT00000032581.4
      Conserved Domains (4) summary
      cd09885
      Location:1241 → 1416
      PIN_Smg6; PIN domain of human telomerase-binding protein EST1, Smg6, and other similar eukaryotic homologs
      pfam05750
      Location:336 → 538
      Rubella_Capsid; Rubella capsid protein
      pfam10373
      Location:751 → 1103
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:638 → 741
      EST1; Telomerase activating protein Est1

    2. XM_015118207.2 → XP_014973693.1  telomerase-binding protein EST1A isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZFU5, H9FRX6
      Related
      ENSMMUP00000064493.1, ENSMMUT00000106584.1
      Conserved Domains (4) summary
      cd09885
      Location:1210 → 1385
      PIN_Smg6; PIN domain of human telomerase-binding protein EST1, Smg6, and other similar eukaryotic homologs
      pfam05750
      Location:305 → 507
      Rubella_Capsid; Rubella capsid protein
      pfam10373
      Location:720 → 1072
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:607 → 710
      EST1; Telomerase activating protein Est1

    3. XM_015118206.2 → XP_014973692.1  telomerase-binding protein EST1A isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZFU5, H9FRX6
      Related
      ENSMMUP00000068365.1, ENSMMUT00000105272.1
      Conserved Domains (4) summary
      cd09885
      Location:1210 → 1385
      PIN_Smg6; PIN domain of human telomerase-binding protein EST1, Smg6, and other similar eukaryotic homologs
      pfam05750
      Location:305 → 507
      Rubella_Capsid; Rubella capsid protein
      pfam10373
      Location:720 → 1072
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:607 → 710
      EST1; Telomerase activating protein Est1

    4. XM_015118205.2 → XP_014973691.1  telomerase-binding protein EST1A isoform X2

      UniProtKB/TrEMBL
      H9FRX6
      Conserved Domains (4) summary
      cd09885
      Location:1230 → 1405
      PIN_Smg6; PIN domain of human telomerase-binding protein EST1, Smg6, and other similar eukaryotic homologs
      pfam05750
      Location:325 → 527
      Rubella_Capsid; Rubella capsid protein
      pfam10373
      Location:740 → 1092
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:627 → 730
      EST1; Telomerase activating protein Est1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.