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    TRPS1 transcriptional repressor GATA binding 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700383, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRPS1provided by VGNC
    Official Full Name
    transcriptional repressor GATA binding 1provided by VGNC
    Primary source
    VGNC:VGNC:78656
    See related
    Ensembl:ENSMMUG00000003435
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRPS1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (115683425..115945598, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (114594839..114857598, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene erythrocyte band 7 integral membrane protein pseudogene Neighboring gene cytidine monophosphate (UMP-CMP) kinase 1, cytosolic-like Neighboring gene uncharacterized LOC114680434 Neighboring gene lysophosphatidic acid receptor 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger transcription factor Trps1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      115683425..115945598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015145904.2 → XP_015001390.2  zinc finger transcription factor Trps1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QV69, A0A1D5QV85, A0A8J8Y2F0, F7F970, G7MZZ7, H9Z2J8
      Related
      ENSMMUP00000051949.2, ENSMMUT00000056916.2
      Conserved Domains (1) summary
      cd00202
      Location:895 → 951
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    2. XM_015145903.2 → XP_015001389.2  zinc finger transcription factor Trps1 isoform X2

      UniProtKB/TrEMBL
      A0A8J8Y2F0, G7MZZ7, H9Z2J8
      Conserved Domains (1) summary
      cd00202
      Location:901 → 957
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    3. XM_015145902.2 → XP_015001388.2  zinc finger transcription factor Trps1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q7X5, A0A8J8Y2F0, G7MZZ7, H9Z2J8
      Related
      ENSMMUP00000070620.1, ENSMMUT00000108649.1
      Conserved Domains (1) summary
      cd00202
      Location:908 → 964
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    4. XM_028852875.1 → XP_028708708.1  zinc finger transcription factor Trps1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QV69, A0A1D5QV85, A0A8J8Y2F0, F7F970, G7MZZ7, H9Z2J8
      Conserved Domains (1) summary
      cd00202
      Location:895 → 951
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    5. XM_028852874.1 → XP_028708707.1  zinc finger transcription factor Trps1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q7X5, A0A8J8Y2F0, G7MZZ7, H9Z2J8
      Related
      ENSMMUP00000067263.1, ENSMMUT00000105184.1
      Conserved Domains (1) summary
      cd00202
      Location:908 → 964
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    Nucleotide Protein
    Heading Accession and Version

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