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    IRF6 interferon regulatory factor 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712958, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IRF6provided by VGNC
    Official Full Name
    interferon regulatory factor 6provided by VGNC
    Primary source
    VGNC:VGNC:73764
    Locus tag
    EGK_01694
    See related
    Ensembl:ENSMMUG00000022065
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See IRF6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (67291387..67312066, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (156707470..156728163)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene chromosome 1 C1orf74 homolog Neighboring gene adenosine receptor A2b pseudogene Neighboring gene TRAF3 interacting protein 3 Neighboring gene UTP25 small subunit processome component Neighboring gene synaptotagmin 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon regulatory factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001267018.1 → NP_001253947.1  interferon regulatory factor 6

      See identical proteins and their annotated locations for NP_001253947.1

      Status: PROVISIONAL

      Source sequence(s)
      JU472495
      UniProtKB/TrEMBL
      A0A8J8YHB4, F7HP73, G7MEN6
      Related
      ENSMMUP00000029056.2, ENSMMUT00000031042.4
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:224 → 407
      IRF-3; Interferon-regulatory factor 3

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      67291387..67312066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015116861.2 → XP_014972347.1  interferon regulatory factor 6 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YHB4, F7HP73, G7MEN6
      Conserved Domains (2) summary
      pfam00605
      Location:9 → 114
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:224 → 407
      IRF-3; Interferon-regulatory factor 3
    Nucleotide Protein
    Heading Accession and Version

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