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    GTF2B general transcription factor IIB [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694770, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GTF2Bprovided by VGNC
    Official Full Name
    general transcription factor IIBprovided by VGNC
    Primary source
    VGNC:VGNC:73306
    See related
    Ensembl:ENSMMUG00000002794
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GTF2B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (135569197..135607657)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (89068747..89107043, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene RBMX like 1 Neighboring gene kynurenine aminotransferase 3 Neighboring gene uncharacterized LOC106999568 Neighboring gene transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene protein kinase N2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor IIB
    NP_001253799.1
    XP_028683105.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266870.1 → NP_001253799.1  transcription initiation factor IIB

      See identical proteins and their annotated locations for NP_001253799.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046860
      UniProtKB/TrEMBL
      G7MHU8, H9Z849
      Related
      ENSMMUP00000039786.3, ENSMMUT00000046757.3
      Conserved Domains (1) summary
      COG1405
      Location:14 → 290
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      135569197..135607657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827272.1 → XP_028683105.1  transcription initiation factor IIB isoform X1

      UniProtKB/TrEMBL
      F7H232, G7MHU8
      Related
      ENSMMUP00000003745.4, ENSMMUT00000003964.4
      Conserved Domains (1) summary
      COG1405
      Location:2 → 259
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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