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    TSEN34 tRNA splicing endonuclease subunit 34 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693919, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TSEN34provided by VGNC
    Official Full Name
    tRNA splicing endonuclease subunit 34provided by VGNC
    Primary source
    VGNC:VGNC:78974
    See related
    Ensembl:ENSMMUG00000016571
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TSEN34 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (53951304..53955195)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (49537397..49541007)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674057 Neighboring gene transmembrane channel like 4 Neighboring gene membrane bound O-acyltransferase domain containing 7 Neighboring gene ribosomal protein S9 Neighboring gene uncharacterized LOC114674054 Neighboring gene leukocyte immunoglobulin like receptor B3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA-intron endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA-type intron splice site recognition and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-intron endonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-splicing endonuclease subunit Sen34
    Names
    tRNA splicing endonuclease 34 homolog
    NP_001248694.1
    XP_014980287.1
    XP_028694180.1
    XP_028694181.1
    XP_028694182.1
    XP_028694183.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261765.1 → NP_001248694.1  tRNA-splicing endonuclease subunit Sen34

      See identical proteins and their annotated locations for NP_001248694.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045026
      UniProtKB/TrEMBL
      A0A5F8AH26, F7H3C1
      Related
      ENSMMUP00000021773.2, ENSMMUT00000023272.4
      Conserved Domains (1) summary
      cd22363
      Location:218 → 306
      tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      53951304..53955195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028838348.1 → XP_028694181.1  tRNA-splicing endonuclease subunit Sen34 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AH26, F7H3C1
      Related
      ENSMMUP00000069169.1, ENSMMUT00000094550.1
      Conserved Domains (1) summary
      cd22363
      Location:218 → 306
      tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase

    2. XM_028838347.1 → XP_028694180.1  tRNA-splicing endonuclease subunit Sen34 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AH26, F7H3C1
      Conserved Domains (1) summary
      cd22363
      Location:218 → 306
      tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase

    3. XM_015124801.2 → XP_014980287.1  tRNA-splicing endonuclease subunit Sen34 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AH26
      Related
      ENSMMUP00000076706.1, ENSMMUT00000101452.1
      Conserved Domains (2) summary
      COG1676
      Location:223 → 312
      SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
      pfam01974
      Location:220 → 304
      tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain

    4. XM_028838350.1 → XP_028694183.1  tRNA-splicing endonuclease subunit Sen34 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AH26, F7H3C1
      Conserved Domains (1) summary
      cd22363
      Location:218 → 306
      tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase

    5. XM_028838349.1 → XP_028694182.1  tRNA-splicing endonuclease subunit Sen34 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AH26, F7H3C1
      Related
      ENSMMUP00000069182.1, ENSMMUT00000093253.1
      Conserved Domains (1) summary
      cd22363
      Location:218 → 306
      tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase
    Nucleotide Protein
    Heading Accession and Version

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