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    SCNM1 sodium channel modifier 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709922, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SCNM1provided by VGNC
    Official Full Name
    sodium channel modifier 1provided by VGNC
    Primary source
    VGNC:VGNC:100133
    Locus tag
    EGK_01253
    See related
    Ensembl:ENSMMUG00000007900
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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    Genomic context

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    See SCNM1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (99940548..99945384, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (125659190..125663716)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 alpha Neighboring gene vacuolar protein sorting 72 homolog Neighboring gene tropomodulin 4 Neighboring gene LysM domain containing 1 Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene semaphorin 6C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium channel modifier 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257712.2 → NP_001244641.1  sodium channel modifier 1

      See identical proteins and their annotated locations for NP_001244641.1

      Status: PROVISIONAL

      Source sequence(s)
      JU322366
      UniProtKB/TrEMBL
      A0A8J8YB23, F6PSF1, G7MDJ8
      Related
      ENSMMUP00000010372.2, ENSMMUT00000011062.4
      Conserved Domains (2) summary
      pfam15803
      Location:44 → 70
      zf-SCNM1; Zinc-finger of sodium channel modifier 1
      pfam15805
      Location:183 → 228
      SCNM1_acidic; Acidic C-terminal region of sodium channel modifier 1 SCNM1

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      99940548..99945384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015150826.2 → XP_015006312.1  sodium channel modifier 1 isoform X1

      Conserved Domains (2) summary
      pfam15803
      Location:9 → 35
      zf-SCNM1; Zinc-finger of sodium channel modifier 1
      pfam15805
      Location:148 → 193
      SCNM1_acidic; Acidic C-terminal region of sodium channel modifier 1 SCNM1
    Nucleotide Protein
    Heading Accession and Version

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