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    PHAF1 phagosome assembly factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695885, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHAF1provided by VGNC
    Official Full Name
    phagosome assembly factor 1provided by VGNC
    Primary source
    VGNC:VGNC:70438
    Locus tag
    EGK_12875
    See related
    Ensembl:ENSMMUG00000018102
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C16orf70; C20H16orf70
    Orthologs
    human mouse all
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    Genomic context

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    See PHAF1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (54294635..54333242)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (51386088..51424769)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene carboxylesterase 4A Neighboring gene core-binding factor subunit beta Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 Neighboring gene uncharacterized LOC114674425 Neighboring gene TNFRSF1A associated via death domain Neighboring gene F-box and leucine rich repeat protein 8 Neighboring gene heat shock transcription factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UPF0183 protein C16orf70 homolog
    Names
    chromosome 20 C16orf70 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      54294635..54333242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015126355.2 → XP_014981841.1  UPF0183 protein C16orf70 homolog isoform X1

      Conserved Domains (1) summary
      pfam03676
      Location:15 → 504
      UPF0183; uncharacterized protein family (UPF0183)

    2. XM_001086873.4 → XP_001086873.1  UPF0183 protein C16orf70 homolog isoform X2

      See identical proteins and their annotated locations for XP_001086873.1

      UniProtKB/TrEMBL
      A0A1D5RGN3, A0A5S6RDI8, A0A8J8XCQ3, F7EFR6, G7NQ41
      Related
      ENSMMUP00000059477.2, ENSMMUT00000071677.2
      Conserved Domains (1) summary
      pfam03676
      Location:15 → 407
      UPF0183; Uncharacterized protein family (UPF0183)
    Nucleotide Protein
    Heading Accession and Version

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