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    SWAP70 switching B cell complex subunit SWAP70 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703651, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SWAP70provided by VGNC
    Official Full Name
    switching B cell complex subunit SWAP70provided by VGNC
    Primary source
    VGNC:VGNC:78142
    Locus tag
    EGK_18945
    See related
    Ensembl:ENSMMUG00000009204
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SWAP70 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (55933489..56017471, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (56736510..56820210, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene SET binding factor 2 Neighboring gene uncharacterized LOC114672343 Neighboring gene uncharacterized LOC106993338 Neighboring gene uncharacterized LOC106993352 Neighboring gene 60S ribosomal protein L39 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of SWAP-70 in the uterus and feto-maternal interface during embryonic implantation and pregnancy in the rhesus monkey (Macaca mulatta). Liu J, et al. Histochem Cell Biol, 2006 Dec. PMID 16786323
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. data indicate that SWAP-70 may be involved in regulating motility of trophoblast cells during embryonic implantation and placentation.
      Title: Expression of SWAP-70 in the uterus and feto-maternal interface during embryonic implantation and pregnancy in the rhesus monkey (Macaca mulatta).
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    switch-associated protein 70
    Names
    SWAP switching B-cell complex 70kDa subunit
    SWAP switching B-cell complex subunit 70
    SWAP-70 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001172414.2 → NP_001165885.1  switch-associated protein 70

      See identical proteins and their annotated locations for NP_001165885.1

      Status: VALIDATED

      Source sequence(s)
      QNVO02000109
      UniProtKB/TrEMBL
      A0A8J8YQJ6, F7HJZ7, F7HJZ8, G7MZC1
      Related
      ENSMMUP00000012067.2, ENSMMUT00000012870.4
      Conserved Domains (2) summary
      cd13273
      Location:204 → 313
      PH_SWAP-70; Switch-associated protein-70 Pleckstrin homology (PH) domain
      TIGR02168
      Location:332 → 549
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      55933489..56017471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832607.1 → XP_028688440.1  switch-associated protein 70 isoform X1

      UniProtKB/TrEMBL
      A0A5F8A403, F7HJZ7
      Related
      ENSMMUP00000072668.1, ENSMMUT00000089416.1
      Conserved Domains (2) summary
      cd13273
      Location:204 → 313
      PH_SWAP-70; Switch-associated protein-70 Pleckstrin homology (PH) domain
      TIGR02168
      Location:332 → 549
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_015114742.2 → XP_014970228.1  switch-associated protein 70 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R7J2
      Related
      ENSMMUP00000056281.2, ENSMMUT00000062806.2
      Conserved Domains (2) summary
      COG4372
      Location:318 → 489
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
      cd13273
      Location:204 → 313
      PH_SWAP-70; Switch-associated protein-70 Pleckstrin homology (PH) domain
    Nucleotide Protein
    Heading Accession and Version

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