U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Rpt6R Regulatory particle triple-A ATPase 6-related [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43635, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rpt6Rprovided by FlyBase
    Official Full Name
    Regulatory particle triple-A ATPase 6-relatedprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039788
    Locus tag
    Dmel_CG2241
    See related
    AllianceGenome:FB:FBgn0039788
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG2241; DmCG2241; Dmel\CG2241; Dm_Rpt6b; Rpt6; Rpt6b; S8
    Summary
    Predicted to enable proteasome-activating activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle, base subcomplex. Is expressed in adult heart and organism. Orthologous to human PSMC5 (proteasome 26S subunit, ATPase 5). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rpt6R in Genome Data Viewer
    Location:
    99F9-99F10; 3-100 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (30582198..30583697, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (26407920..26409419, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene tropomodulin Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables proteasome-activating activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables proteasome-activating activity ISM
    Inferred from Sequence Model
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, base subcomplex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of proteasome regulatory particle, base subcomplex ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    regulatory particle triple-A ATPase 6-related
    Names
    CG2241-PA
    Rpt6R-PA
    NP_651811.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      30582198..30583697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143554.2NP_651811.1  regulatory particle triple-A ATPase 6-related [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651811.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VA54
      Related
      FBpp0085042
      Conserved Domains (2) summary
      COG1222
      Location:3396
      RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
      pfam00004
      Location:180311
      AAA; ATPase family associated with various cellular activities (AAA)