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    CG4004 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32226, updated on 9-Dec-2024

    Summary

    Official Symbol
    CG4004provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030418
    Locus tag
    Dmel_CG4004
    See related
    AllianceGenome:FB:FBgn0030418
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG18137; Dmel\CG4004
    Summary
    Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See CG4004 in Genome Data Viewer
    Location:
    11B14-11B14; 1-39 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (12744212..12749785)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (12638245..12643818)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Smrter Neighboring gene long non-coding RNA:CR43963 Neighboring gene antisense RNA:CR45623 Neighboring gene long non-coding RNA:CR44619 Neighboring gene VSR interacting RNA Neighboring gene PAICS bifunctional enzyme

    Genomic regions, transcripts, and products

    Interactions

    General gene information

    mobile_element

    • Loc: 12746438-12746698 mobile_element_type = transposon:H{}2372

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in nucleus PubMed 

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG4004-PA
    CG4004-PC
    CG4004-PD
    CG4004-PE
    CG4004-PF

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      12744212..12749785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298237.1 → NP_001285166.1  uncharacterized protein Dmel_CG4004, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285166.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHZ5, Q9VYJ7
      Conserved Domains (1) summary
      pfam10545
      Location:19 → 104
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like
    2. NM_132596.2 → NP_572824.1  uncharacterized protein Dmel_CG4004, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572824.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHZ5, Q9VYJ7
      Related
      FBpp0073519
      Conserved Domains (1) summary
      pfam10545
      Location:19 → 104
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like
    3. NM_001298236.1 → NP_001285165.1  uncharacterized protein Dmel_CG4004, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285165.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHZ5, Q9VYJ7
      Conserved Domains (1) summary
      pfam10545
      Location:19 → 104
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like
    4. NM_167336.4 → NP_727638.2  uncharacterized protein Dmel_CG4004, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K230, Q95RL5, Q9VYJ6
      Conserved Domains (1) summary
      pfam10545
      Location:14 → 99
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like
    5. NM_001272563.1 → NP_001259492.1  uncharacterized protein Dmel_CG4004, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259492.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1NZC1, M9PHP0
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