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    lncRNA:bxd bithoraxoid [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3772220, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lncRNA:bxdprovided by FlyBase
    Official Full Name
    bithoraxoidprovided by FlyBase
    Primary source
    FLYBASE:FBgn0020556
    Locus tag
    Dmel_CR31273
    See related
    AllianceGenome:FB:FBgn0020556
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    bxd; bxd RNA; CR31273; CR31277; Dmel\CR31273; lncRNA-bxd
    Summary
    Involved in negative regulation of DNA-templated transcription. Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lncRNA:bxd in Genome Data Viewer
    Location:
    89E1-89E1; 3-59 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16742125..16773189, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12567847..12598911, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene modular serine protease Neighboring gene Ultrabithorax Neighboring gene antisense RNA:PS4 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44945 Neighboring gene Glucose transporter type 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel transcripts from the Ultrabithorax domain of the bithorax complex. Lipshitz HD, et al. Genes Dev, 1987 May. PMID 3119423
    2. Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species. Dellino GI, et al. Int J Dev Biol, 2002 Jan. PMID 11902674
    3. The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster. Davis GK, et al. Dev Biol, 2007 Aug 15. PMID 17640629, Free PMC Article
    4. Noncoding RNAs of the Ultrabithorax domain of the Drosophila bithorax complex. Pease B, et al. Genetics, 2013 Dec. PMID 24077301, Free PMC Article
    5. The border between the ultrabithorax and abdominal-A regulatory domains in the Drosophila bithorax complex. Bender W, et al. Genetics, 2013 Apr. PMID 23288934, Free PMC Article

    See all (75) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Association of Trl and Pc with bxd depends on transcriptional activity.
      Title: Association of trxG and PcG proteins with the bxd maintenance element depends on transcriptional activity.
    Submit: New GeneRIF Correction

    General gene information

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    mobile_element

    • Loc: c16762507-16756375 mobile_element_type = transposon:diver{}1372

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in negative regulation of DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      16742125..16773189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_002035.1 RNA Sequence

      Status: REVIEWED

    2. NR_002032.1 RNA Sequence

      Status: REVIEWED

    3. NR_002033.2 RNA Sequence

      Status: REVIEWED

    4. NR_002034.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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