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    SCPL13 serine carboxypeptidase-like 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816829, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCPL13
    Official Full Name
    serine carboxypeptidase-like 13
    Primary source
    TAIR:AT2G22980
    Locus tag
    AT2G22980
    See related
    Araport:AT2G22980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    serine carboxypeptidase-like 13; T20K9.20
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    Genomic context

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    See SCPL13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (9778759..9783310)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene serine carboxypeptidase-like 11 Neighboring gene sinapoylglucose 1 Neighboring gene ncRNA Neighboring gene serine carboxypeptidase-like 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities. Fraser CM, et al. Plant Physiol, 2007 Aug. PMID 17600138, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. encodes an enzyme capable of synthesizing 1,2-disinapoyl-glucose from two molecules of sinapoyl-glucose
      Title: Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001036325.3
    NM_001084478.1
    NM_001335832.1
    NM_001335833.1
    NM_127863.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 13
    NP_001031402.1
    • serine carboxypeptidase-like 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077947.1
    • serine carboxypeptidase-like 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.3); Has 4003 Blast hits to 3936 proteins in 468 species: Archae - 0; Bacteria - 512; Metazoa - 625; Fungi - 814; Plants - 1533; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).
    NP_001318270.1
    • serine carboxypeptidase-like 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.1); Has 3923 Blast hits to 3846 proteins in 444 species: Archae - 0; Bacteria - 407; Metazoa - 639; Fungi - 820; Plants - 1542; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).
    NP_179881.3
    • serine carboxypeptidase-like 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.1); Has 4004 Blast hits to 3927 proteins in 473 species: Archae - 0; Bacteria - 512; Metazoa - 640; Fungi - 845; Plants - 1555; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9778759..9783310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127863.5 → NP_179881.3  serine carboxypeptidase-like 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179881.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64808, Q8H780, Q94EH0
      UniProtKB/TrEMBL
      A0A5S9X0Q8
      Conserved Domains (1) summary
      cl08270
      Location:17 → 430
      Peptidase_S10; Serine carboxypeptidase

    2. NM_001036325.3 → NP_001031402.1  serine carboxypeptidase-like 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031402.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0Q8
      Conserved Domains (1) summary
      cl08270
      Location:17 → 406
      Peptidase_S10; Serine carboxypeptidase

    3. NM_001335833.1 → NP_001324656.1  serine carboxypeptidase-like 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0V9

    4. NM_001335832.1 → NP_001318270.1  serine carboxypeptidase-like 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2ECJ2, A8MQG4

    5. NM_001084478.1 → NP_001077947.1  serine carboxypeptidase-like 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077947.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0Q8, A8MQS0
      Conserved Domains (1) summary
      cl08270
      Location:17 → 405
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H780.2

    Gene LinkOut

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