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    18S pre-ribosomal assembly protein gar2-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814907, updated on 18-Sep-2024

    Summary

    Official Full Name
    18S pre-ribosomal assembly protein gar2-like protein
    Primary source
    TAIR:AT2G03810
    Locus tag
    AT2G03810
    See related
    Araport:AT2G03810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18C20.1; T18C20_1
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (1160947..1164657)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene D-aminoacyl-tRNA deacylase Neighboring gene nonsense-mediated mRNA decay NMD3 family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    General gene information

    NM_001035889.3
    NM_001124788.2
    NM_001335204.1
    NM_001335205.1
    NM_001335206.1
    NM_126427.4
    NM_201683.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of asymmetric cell division IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    18S pre-ribosomal assembly protein gar2-like protein
    NP_001030966.1
    • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001118260.1
    • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001318194.1
    • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 7945 Blast hits to 4358 proteins in 575 species: Archae - 23; Bacteria - 2851; Metazoa - 1872; Fungi - 665; Plants - 238; Viruses - 54; Other Eukaryotes - 2242 (source: NCBI BLink).
    NP_973412.1
    • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1160947..1164657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124788.2NP_001118260.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118260.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    2. NM_001335204.1NP_001318194.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    3. NM_001335205.1NP_001324260.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    4. NM_201683.3NP_973412.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973412.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    5. NM_001035889.3NP_001030966.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030966.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    6. NM_126427.4NP_178475.2  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178475.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    7. NM_001335206.1NP_001324261.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
      Conserved Domains (1) summary
      COG5271
      Location:115368
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]