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    CCB4 cofactor assembly of complex C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842278, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CCB4
    Official Full Name
    cofactor assembly of complex C
    Primary source
    TAIR:AT1G59840
    Locus tag
    AT1G59840
    See related
    Araport:AT1G59840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cofactor assembly of complex C; F23H11.16; F23H11_16
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    Genomic context

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    See CCB4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (22026462..22029379)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene DNA-directed RNA polymerase II subunit RPB1-like protein Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene HSP20-like chaperones superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel pathway of cytochrome c biogenesis is involved in the assembly of the cytochrome b6f complex in arabidopsis chloroplasts. Lezhneva L, et al. J Biol Chem, 2008 Sep 5. PMID 18593701, Free PMC Article
    2. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333869.1
    NM_104677.5
    NM_202322.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytochrome b6f complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cofactor assembly of complex C
    NP_176193.2
    • cofactor assembly of complex C (CCB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2930 (InterPro:IPR021325); Has 391 Blast hits to 391 proteins in 82 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
    NP_974051.1
    • cofactor assembly of complex C (CCB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2930 (InterPro:IPR021325); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22026462..22029379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202322.2 → NP_974051.1  cofactor assembly of complex C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974051.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQK9, Q9XIE5
      UniProtKB/TrEMBL
      A0A5S9WNC3, A0A654EJI4
      Conserved Domains (1) summary
      pfam11152
      Location:70 → 278
      CCB2_CCB4; Cofactor assembly of complex C subunit B, CCB2/CCB4

    2. NM_104677.5 → NP_176193.2  cofactor assembly of complex C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176193.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQK9, Q9XIE5
      UniProtKB/TrEMBL
      A0A5S9WNC3, A0A654EJI4
      Conserved Domains (1) summary
      pfam11152
      Location:70 → 278
      CCB2_CCB4; Cofactor assembly of complex C subunit B, CCB2/CCB4

    3. NM_001333869.1 → NP_001321983.1  cofactor assembly of complex C [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASR1, A0A5S9WNC3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NQK9.1

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