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    JAZ4 jasmonate-zim-domain protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841271, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAZ4
    Official Full Name
    jasmonate-zim-domain protein 4
    Primary source
    TAIR:AT1G48500
    Locus tag
    AT1G48500
    See related
    Araport:AT1G48500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtJAZ4; jasmonate-zim-domain protein 4; T1N15.11; T1N15_11; TIFY DOMAIN PROTEIN 6A; TIFY6A
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    Genomic context

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    See JAZ4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17931390..17934662)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene receptor-like kinase 1 Neighboring gene Protein kinase superfamily protein Neighboring gene Surfeit locus 1 cytochrome c oxidase biogenesis protein Neighboring gene GLU-ADT subunit B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Review: Losing JAZ4 for growth and defense. Miccono MLA, et al. Plant Sci, 2023 Oct. PMID 37543224
    2. Spatiotemporal regulation of JAZ4 expression and splicing contribute to ethylene- and auxin-mediated responses in Arabidopsis roots. DeMott L, et al. Plant J, 2021 Dec. PMID 34562337
    3. JAZ4 is involved in plant defense, growth, and development in Arabidopsis. Oblessuc PR, et al. Plant J, 2020 Jan. PMID 31557372
    4. Arabidopsis WRKY57 functions as a node of convergence for jasmonic acid- and auxin-mediated signaling in jasmonic acid-induced leaf senescence. Jiang Y, et al. Plant Cell, 2014 Jan. PMID 24424094, Free PMC Article
    5. Transcriptional Mechanism of Jasmonate Receptor COI1-Mediated Delay of Flowering Time in Arabidopsis. Zhai Q, et al. Plant Cell, 2015 Oct. PMID 26410299, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Review: Losing JAZ4 for growth and defense.
      Title: Review: Losing JAZ4 for growth and defense.
    2. Spatiotemporal regulation of JAZ4 expression and splicing contribute to ethylene- and auxin-mediated responses in Arabidopsis roots.
      Title: Spatiotemporal regulation of JAZ4 expression and splicing contribute to ethylene- and auxin-mediated responses in Arabidopsis roots.
    3. JAZ4 is involved in plant defense, growth, and development in Arabidopsis.
      Title: JAZ4 is involved in plant defense, growth, and development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001123978.2
    NM_001123979.2
    NM_103746.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within jasmonic acid and ethylene-dependent systemic resistance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within jasmonic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jasmonate-zim-domain protein 4
    NP_001117450.1
    • jasmonate-zim-domain protein 4 (JAZ4); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 3 (TAIR:AT3G17860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001117451.1
    • jasmonate-zim-domain protein 4 (JAZ4); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 3 (TAIR:AT3G17860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_175283.2
    • jasmonate-zim-domain protein 4 (JAZ4); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 3 (TAIR:AT3G17860.1); Has 328 Blast hits to 328 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 326; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17931390..17934662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001123978.2 → NP_001117450.1  jasmonate-zim-domain protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117450.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WMR4, B3H4G3
      Conserved Domains (2) summary
      pfam06200
      Location:142 → 175
      tify; tify domain
      pfam09425
      Location:259 → 276
      CCT_2; Divergent CCT motif

    2. NM_103746.3 → NP_175283.2  jasmonate-zim-domain protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175283.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q58G47, Q9LP75
      UniProtKB/TrEMBL
      A0A178WHG6, A0A5S9WMR4
      Conserved Domains (2) summary
      pfam06200
      Location:142 → 175
      tify; tify domain
      pfam09425
      Location:259 → 283
      CCT_2; Divergent CCT motif

    3. NM_001123979.2 → NP_001117451.1  jasmonate-zim-domain protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117451.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H630
      Conserved Domains (2) summary
      pfam06200
      Location:112 → 145
      tify; tify domain
      pfam09425
      Location:229 → 246
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58G47.1

    Gene LinkOut

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