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    PAPA-1-like family protein / zinc finger (HIT type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819851, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PAPA-1-like family protein / zinc finger (HIT type) family protein
    Primary source
    TAIR:AT3G06660
    Locus tag
    AT3G06660
    See related
    Araport:AT3G06660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8E24.3
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (2102316..2104908)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 22A1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene tRNA-His Neighboring gene binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111546.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PAPA-1-like family protein / zinc finger (HIT type) family protein
    NP_566289.1
    • PAPA-1-like family protein / zinc finger (HIT type) family protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger; PAPA-1-like conserved region (TAIR:AT2G47350.1); Has 668 Blast hits to 539 proteins in 161 species: Archae - 0; Bacteria - 83; Metazoa - 198; Fungi - 84; Plants - 88; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2102316..2104908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111546.4 → NP_566289.1  PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566289.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VD47, Q94CE6
      Conserved Domains (2) summary
      pfam04438
      Location:383 → 414
      zf-HIT; HIT zinc finger
      pfam04795
      Location:282 → 366
      PAPA-1; PAPA-1-like conserved region
    Nucleotide Protein
    Heading Accession and Version

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