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    HCF243 Serine/Threonine-kinase pakA-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820740, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HCF243
    Official Full Name
    Serine/Threonine-kinase pakA-like protein
    Primary source
    TAIR:AT3G15095
    Locus tag
    AT3G15095
    See related
    Araport:AT3G15095
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    high chlorophyll fluorescence 243
    Summary
    Encodes HCF243 (high chlorophyll fluorescence), a chloroplast-localized protein involved in the D1 protein stability of the photosystem II complex1.
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    Genomic context

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    See HCF243 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5081780..5084240)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene serine/arginine repetitive matrix protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. HCF243 encodes a chloroplast-localized protein involved in the D1 protein stability of the arabidopsis photosystem II complex. Zhang D, et al. Plant Physiol, 2011 Oct. PMID 21862668, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. HCF243 may act as a cofactor to maintain the stability of D1 protein and to promote the subsequent assembly of the PSII complex [HCF243]
      Title: HCF243 encodes a chloroplast-localized protein involved in the D1 protein stability of the arabidopsis photosystem II complex.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084688.1
    NM_001125158.1
    NM_112372.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosystem II assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Serine/Threonine-kinase pakA-like protein
    NP_001078157.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9396 Blast hits to 6248 proteins in 757 species: Archae - 72; Bacteria - 1337; Metazoa - 3078; Fungi - 696; Plants - 406; Viruses - 135; Other Eukaryotes - 3672 (source: NCBI BLink).
    NP_001118630.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_188128.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5081780..5084240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112372.3 → NP_188128.1  Serine/Threonine-kinase pakA-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188128.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAV1, A0A384K8R0, A0A654F8D3, Q9LIM5

    2. NM_001084688.1 → NP_001078157.1  Serine/Threonine-kinase pakA-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078157.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z373, F4IXG8

    3. NM_001125158.1 → NP_001118630.1  Serine/Threonine-kinase pakA-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118630.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H575, Q0WQQ0
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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