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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828133, updated on 18-Sep-2024

    Summary

    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT4G01570
    Locus tag
    AT4G01570
    See related
    Araport:AT4G01570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15B16.21; T15B16_21
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (679472..681940)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 69 Neighboring gene Ribosomal RNA processing Brix domain protein Neighboring gene serine protease inhibitor, Kazal-type family protein Neighboring gene ncRNA Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene ncRNA Neighboring gene ncRNA

    General gene information

    NM_116387.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion  

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_192066.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 59349 Blast hits to 13105 proteins in 268 species: Archae - 8; Bacteria - 24; Metazoa - 241; Fungi - 448; Plants - 57026; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      679472..681940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116387.2 → NP_192066.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192066.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82588, Q8VZE4, Q9M124
      UniProtKB/TrEMBL
      A0A5S9XQR8, A0A654FKZ5, A0A7G2EVB3
      Conserved Domains (5) summary
      TIGR00756
      Location:701 → 735
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:291 → 318
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:250 → 277
      PPR; PPR repeat
      pfam12854
      Location:319 → 351
      PPR_1; PPR repeat
      pfam13041
      Location:287 → 336
      PPR_2; PPR repeat family
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