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    TIP1;3 tonoplast intrinsic protein 1;3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828051, updated on 18-Sep-2024

    Summary

    Official Symbol
    TIP1;3
    Official Full Name
    tonoplast intrinsic protein 1;3
    Primary source
    TAIR:AT4G01470
    Locus tag
    AT4G01470
    See related
    Araport:AT4G01470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTIP1.3; F11O4.1; F11O4_1; GAMMA-TIP3; tonoplast intrinsic protein 1;3
    Summary
    Encodes AtTIP1;3, functions as water and urea channels in pollen.
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    Genomic context

    See TIP1;3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (624786..625885, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene pyrophosphorylase 5 Neighboring gene ncRNA

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_116377.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables urea transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables water channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables water channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within urea transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within water transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    tonoplast intrinsic protein 1;3
    NP_192056.1
    • tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      624786..625885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116377.2NP_192056.1  tonoplast intrinsic protein 1;3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192056.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MF47, O82598, Q1PEC5
      UniProtKB/TrEMBL
      A0A178UYQ7, A0A654FKX8
      Conserved Domains (1) summary
      PLN00027
      Location:1252
      PLN00027; aquaporin TIP; Provisional