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    PPT1 polyprenyltransferase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828466, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPT1
    Official Full Name
    polyprenyltransferase 1
    Primary source
    TAIR:AT4G23660
    Locus tag
    AT4G23660
    See related
    Araport:AT4G23660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    4-HYDROXYBENZOATE POLYPRENYL DIPHOSPHATE TRANSFERASE; AtPPT1; F9D16.130; F9D16_130; polyprenyltransferase 1
    Summary
    Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).
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    Genomic context

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    See PPT1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (12327638..12331876, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene VIRB2-interacting protein 1 Neighboring gene tRNA-Leu Neighboring gene Potassium transporter family protein Neighboring gene calcium-dependent protein kinase 6 Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The AtPPT1 gene encoding 4-hydroxybenzoate polyprenyl diphosphate transferase in ubiquinone biosynthesis is required for embryo development in Arabidopsis thaliana. Okada K, et al. Plant Mol Biol, 2004 Jul. PMID 15604701
    2. Major signaling pathways modulate Arabidopsis glucosinolate accumulation and response to both phloem-feeding and chewing insects. Mewis I, et al. Plant Physiol, 2005 Jun. PMID 15923339, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001203886.1
    NM_001341624.1
    NM_001341625.1
    NM_118497.4
    NM_179100.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 4-hydroxybenzoate polyprenyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 4-hydroxybenzoate polyprenyltransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to insect IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ubiquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ubiquinone biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    polyprenyltransferase 1
    NP_001190815.1
    • polyprenyltransferase 1 (PPT1); FUNCTIONS IN: 4-hydroxybenzoate nonaprenyltransferase activity; INVOLVED IN: ubiquinone biosynthetic process, embryo development; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxybenzoate polyprenyl transferase (InterPro:IPR006370), UbiA prenyltransferase (InterPro:IPR000537).
    NP_001320050.1
    • polyprenyltransferase 1 (PPT1); FUNCTIONS IN: 4-hydroxybenzoate nonaprenyltransferase activity; INVOLVED IN: ubiquinone biosynthetic process, embryo development; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxybenzoate polyprenyl transferase (InterPro:IPR006370), UbiA prenyltransferase (InterPro:IPR000537); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849431.1
    • polyprenyltransferase 1 (PPT1); FUNCTIONS IN: 4-hydroxybenzoate nonaprenyltransferase activity; INVOLVED IN: ubiquinone biosynthetic process, embryo development; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxybenzoate polyprenyl transferase (InterPro:IPR006370), UbiA prenyltransferase (InterPro:IPR000537); Has 8781 Blast hits to 8779 proteins in 1934 species: Archae - 174; Bacteria - 4966; Metazoa - 236; Fungi - 294; Plants - 110; Viruses - 0; Other Eukaryotes - 3001 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12327638..12331876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179100.4 → NP_849431.1  polyprenyltransferase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849431.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93YP7, Q9FRU7, Q9SUR1
      UniProtKB/TrEMBL
      A0A178V1U7
      Conserved Domains (1) summary
      PLN02809
      Location:119 → 407
      PLN02809; 4-hydroxybenzoate nonaprenyltransferase

    2. NM_001341624.1 → NP_001320050.1  polyprenyltransferase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93YP7, Q9FRU7, Q9SUR1
      UniProtKB/TrEMBL
      A0A178V1U7

    3. NM_001341625.1 → NP_001328939.1  polyprenyltransferase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93YP7, Q9FRU7, Q9SUR1
      UniProtKB/TrEMBL
      A0A178V1U7

    4. NM_118497.4 → NP_567688.1  polyprenyltransferase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567688.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93YP7, Q9FRU7, Q9SUR1
      UniProtKB/TrEMBL
      A0A178V1U7
      Conserved Domains (1) summary
      PLN02809
      Location:119 → 407
      PLN02809; 4-hydroxybenzoate nonaprenyltransferase

    5. NM_001203886.1 → NP_001190815.1  polyprenyltransferase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190815.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1U7, F4JPA9
      Conserved Domains (1) summary
      PLN02809
      Location:119 → 429
      PLN02809; 4-hydroxybenzoate nonaprenyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YP7.1

    Gene LinkOut

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