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    Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828483, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat (LRR) family protein
    Primary source
    TAIR:AT4G23840
    Locus tag
    AT4G23840
    See related
    Araport:AT4G23840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT4G23830; T32A16.10; T32A16_10
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (12400177..12403487)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 24 Neighboring gene HMG (high mobility group) box protein Neighboring gene WRKY family transcription factor Neighboring gene Pectin lyase-like superfamily protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene PHD finger protein-like protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High overexpression of CERES, a plant regulator of translation, induces different phenotypical defence responses during TuMV infection. Toribio R, et al. Plant J, 2021 Jul. PMID 33899980
    2. A novel eIF4E-interacting protein that forms non-canonical translation initiation complexes. Toribio R, et al. Nat Plants, 2019 Dec. PMID 31819221, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. High overexpression of CERES, a plant regulator of translation, induces different phenotypical defence responses during TuMV infection.
      Title: High overexpression of CERES, a plant regulator of translation, induces different phenotypical defence responses during TuMV infection.
    2. CERES (At4g23840) is a eIF4E-interacting protein and contains an LRR domain and a canonical eIF4E-binding site.
      Title: A novel eIF4E-interacting protein that forms non-canonical translation initiation complexes.
    Submit: New GeneRIF Correction

    General gene information

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    NM_118515.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat (LRR) family protein
    NP_194115.3
    • Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat family protein (TAIR:AT1G15740.1); Has 13188 Blast hits to 8222 proteins in 561 species: Archae - 2; Bacteria - 5781; Metazoa - 2271; Fungi - 110; Plants - 3199; Viruses - 40; Other Eukaryotes - 1785 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12400177..12403487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118515.4 → NP_194115.3  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194115.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1M3, A0A5S9XW45, A0A7G2F0F5, Q8L4C7
      Conserved Domains (4) summary
      cd09293
      Location:85 → 238
      AMN1; Antagonist of mitotic exit network protein 1
      cd00116
      Location:291 → 490
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:252 → 273
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:299 → 323
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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