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    RING/FYVE/PHD-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823398, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD-type zinc finger family protein
    Primary source
    TAIR:AT3G43230
    Locus tag
    AT3G43230
    See related
    Araport:AT3G43230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (15207367..15209853)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP binding microtubule motor family protein Neighboring gene Phosphoinositide phosphatase family protein Neighboring gene ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene coiled-coil protein (DUF572) Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant autophagosomes mature into amphisomes prior to their delivery to the central vacuole. Zhao J, et al. J Cell Biol, 2022 Dec 5. PMID 36260289, Free PMC Article
    2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114191.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in phagophore assembly site membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING/FYVE/PHD-type zinc finger family protein
    NP_189909.1
    • RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT1G29800.1); Has 4080 Blast hits to 3974 proteins in 331 species: Archae - 0; Bacteria - 230; Metazoa - 2175; Fungi - 711; Plants - 392; Viruses - 3; Other Eukaryotes - 569 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15207367..15209853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114191.4 → NP_189909.1  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189909.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFN0, A0A654FCI9, Q8LG81, Q9LXL1
      Conserved Domains (2) summary
      cd11526
      Location:278 → 479
      SYLF_FYVE; The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins
      pfam01363
      Location:171 → 236
      FYVE; FYVE zinc finger
    Nucleotide Protein
    Heading Accession and Version

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