U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    transmembrane protein, putative (DUF677) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824069, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    transmembrane protein, putative (DUF677)
    Primary source
    TAIR:AT3G49070
    Locus tag
    AT3G49070
    See related
    Araport:AT3G49070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (18192347..18193867, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ATP-binding protein Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene Ribosomal protein S5 domain 2-like superfamily protein Neighboring gene Signal recognition particle, SRP9/SRP14 subunit Neighboring gene peroxidase CA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_114766.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein, putative (DUF677)
    NP_190476.1
    • Protein of unknown function (DUF677); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19330.1); Has 169 Blast hits to 169 proteins in 18 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18192347..18193867 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339397.1 → NP_001326284.1  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNT4, A0A5S9XJ98

    2. NM_114766.1 → NP_190476.1  transmembrane protein, putative (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190476.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SMU4
      UniProtKB/TrEMBL
      A0A5S9XJ98
      Conserved Domains (1) summary
      cl21731
      Location:230 → 397
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SMU4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.