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    Plant regulator RWP-RK family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825127, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant regulator RWP-RK family protein
    Primary source
    TAIR:AT3G59580
    Locus tag
    AT3G59580
    See related
    Araport:AT3G59580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NIN-like protein 9; NLP9
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (22009008..22012804)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Rad21/Rec8-like family protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene jacalin lectin family protein Neighboring gene RNA polymerase Rpb8 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035818.3
    NM_001339989.1
    NM_115820.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant regulator RWP-RK family protein
    NP_001030895.1
    • Plant regulator RWP-RK family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT2G43500.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_191517.1
    • Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT2G43500.2); Has 701 Blast hits to 585 proteins in 46 species: Archae - 0; Bacteria - 15; Metazoa - 3; Fungi - 0; Plants - 625; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22009008..22012804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035818.3 → NP_001030895.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030895.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQJ4, Q9M1B0
      UniProtKB/TrEMBL
      A0A178VBS8, A0A654FJ90
      Conserved Domains (2) summary
      cd06407
      Location:793 → 874
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:535 → 583
      RWP-RK; RWP-RK domain

    2. NM_115820.4 → NP_191517.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191517.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQJ4, Q9M1B0
      UniProtKB/TrEMBL
      A0A178VBS8, A0A654FJ90
      Conserved Domains (2) summary
      cd06407
      Location:793 → 874
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:535 → 583
      RWP-RK; RWP-RK domain

    3. NM_001339989.1 → NP_001327143.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQJ4, Q9M1B0
      UniProtKB/TrEMBL
      A0A178VBS8, A0A654FJ90
      Conserved Domains (2) summary
      cd06407
      Location:793 → 874
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:535 → 583
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1B0.1

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